Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3267g00105 ATGGATCTTGATTTGAACGAGGAGCCCTTGGACCAAACCCCTACTTCAGTGATTGGATTTGATTCGATATTGGATGAGCTAGAATCAACCCATGAACATATAGAAGAGCGCATTAGGCAACTTGAAGCAGTAACCTTGAGAGCCAGGCAGCGTCAGAGGTGGCGGCGGGGTCATGATTCAGTTCAAATAAATAATGTCATGGCAGATATGATGATGACGCCTAGTGCTCGTGATGAACACAGGACACCCCAAGAAGATGTTGGTGTTGCAGTCCAGGAAGGAACAGTTGTTTTAGCAGAATTGACAGCAACTAATGCTCATAATGAAGGTATCTTGTCTAGGGAAGACCCTGGTGCTGACCAAGAAAGAACAGTCAACCATAGGAAAACGGGCAAAAGGAACAGTTCGCATTTAGTAGCTCAAGCATTGGGTATGGATCCATATATAGATGAGGCAGTGAGCAGCACCGGGAATTTTTTTGACTGTAATATCTGTTTGGACATGGCGAGGGATCCGATTTTGACATGCTGTGGTCACTTATTCTGTTGGCCATGCTTCTATCAGGTGTCATATGCTTATTCAAATGTAAGGGAGTGCCCTGTTTGTAAGGGAGAGGTCGCTGAAACAGGCATTATTCCAATATATGGAAATAAAGATGACTCTAGCAACCGTCAATTGGAATTGAAAGAAAGTGGCTTCACTATCCCTCCTCGGCCCCAGGCACATAGAATTGAGAGTCTCAGACAACAGCTCATAAGCAGGGGAGCATCATCGTCTACAATCCAGGAGATTAGGCGATTTATTGGTTCGGCTGCAGCTGATGGAACTCGTTTTTCATTCAATCAACCTCACCATTCCCAGCCCCAAGCATTGCATGGCATGGAGACTGGAATGAGGCAGCATAATCGTTCACGTCTACTTTCAAGGTTGTTAGTGGAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCATTAAATTCTGCAATGGATTCTGCTGAAAGATTAGTTGGAGACCTTGAAGCATATATTCGTCCTCAACAACCTCAACCCATAGGAAGCTCTAGAGAGCTGCTTGATCCTCTTCCTCATAATGGAGTTTTACCTTCTAGCATTGCTGCTACAAACCAATCAGGGAGACATATTCCAGACGTTGGTGCGAGCAATTCTGCAGCCAATGCTTCTGTTTCTCCTTTACATATGCATGGTGACGCAACTGCTATAATAGATTCAGGTATCCTGACAACAGATAACAGCGTACAAGTTAGTTCAACAGAGCCTTCTTCGTCTTCTAGCAGAACTGTTGTGATAGGGATTCCAGACCTTTACAATAGAGTTTCAAATGGGCGCAGAAGAAGAAGGTTAAGAAGATGA 1371 0.4427 MDLDLNEEPLDQTPTSVIGFDSILDELESTHEHIEERIRQLEAVTLRARQRQRWRRGHDSVQINNVMADMMMTPSARDEHRTPQEDVGVAVQEGTVVLAELTATNAHNEGILSREDPGADQERTVNHRKTGKRNSSHLVAQALGMDPYIDEAVSSTGNFFDCNICLDMARDPILTCCGHLFCWPCFYQVSYAYSNVRECPVCKGEVAETGIIPIYGNKDDSSNRQLELKESGFTIPPRPQAHRIESLRQQLISRGASSSTIQEIRRFIGSAAADGTRFSFNQPHHSQPQALHGMETGMRQHNRSRLLSRLLVEGAASFSSLSSALNSAMDSAERLVGDLEAYIRPQQPQPIGSSRELLDPLPHNGVLPSSIAATNQSGRHIPDVGASNSAANASVSPLHMHGDATAIIDSGILTTDNSVQVSSTEPSSSSSRTVVIGIPDLYNRVSNGRRRRRLRR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3267g00105 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 216 IPR013083 -
Pral3267g00105 456 SMART ring_2 162 202 IPR001841 -
Pral3267g00105 456 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Pral3267g00105 456 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 123 297 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pral3267g00105 456 Pfam zinc-RING finger domain 162 203 IPR001841 -
Pral3267g00105 456 SUPERFAMILY RING/U-box 154 211 - -
Pral3267g00105 456 Coils Coil 24 44 - -
Pral3267g00105 456 MobiDBLite consensus disorder prediction 111 133 - -
Pral3267g00105 456 MobiDBLite consensus disorder prediction 113 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3267g00105 Pral-Chr3267 787076 789436 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3267g00105 149 268 C3H Transcription Factor Family AT3G58030 49.587 2.67e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3267g00105 - - pcin:129296436 749.199