Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3267g00054 ATGGGAGCCGGAAAGCGGAACACAGAGATCAAGAAAATTGAGAACAAATCAGCGAGGTACGTTTGCTTCTCCAAGCGCCGCGAGGGACTGTTCAAGAAGGCTCAGCAATACCACAAAATCTCTGGGCCCCTCATTGCGGTACTGGTCTTTTCTCCTACTGGAAGATCCTACGTCCATGGCTCCCCTTCCTTCGACCCCATCATTGACCAATTCCTTCACAGCTCCACCGCGGCGTCAATGACGACTATGACAGCCGCCGGCACCAGCAGCACCGGCGGGAGCTGTATGACGGAGCCCTCTGTTTCCGACTCTGCCTCTACTACTAACAACGTGGGTTTGAGAGAACAGGTGGAGGCGATCAAATTGGAAGGGTGTGACAGTTTGGAGGAGCTGTTGGAGATGAAGAGGAAACTGGAAGAGGTTAGAGAGACGGTGCTATGCAGTTTCGCGGACTCGCTCATCTCAGCATTCTAG 474 0.5338 MGAGKRNTEIKKIENKSARYVCFSKRREGLFKKAQQYHKISGPLIAVLVFSPTGRSYVHGSPSFDPIIDQFLHSSTAASMTTMTAAGTSSTGGSCMTEPSVSDSASTTNNVGLREQVEAIKLEGCDSLEELLEMKRKLEEVRETVLCSFADSLISAF 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3267g00054 157 MobiDBLite consensus disorder prediction 87 108 - -
Pral3267g00054 157 SUPERFAMILY SRF-like 4 80 IPR036879 GO:0003677|GO:0046983
Pral3267g00054 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Pral3267g00054 157 Gene3D - 15 85 IPR036879 GO:0003677|GO:0046983
Pral3267g00054 157 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Pral3267g00054 157 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Pral3267g00054 157 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Pral3267g00054 157 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Pral3267g00054 157 PANTHER MADS BOX PROTEIN 7 145 - -
Pral3267g00054 157 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3267g00054 Pral-Chr3267 467252 468022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3267g00054 4 83 Type I MADS-box Gene Family AT1G47760 38.750 1.07e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral3267g00054 SRF-TF 1.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3267g00054 - K12412 cit:127901294 104.76