LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3254g00002	ATGGTCTCCAAAACAGAGGCAAATATGGCTTCGCTGCTACCATACGGCGACGTTGATTTCAGCCTGAGGGCAATGGCGGGTCGCGCTGAGGGATTTGGTTGCAACTCCATCGGTGGCCTCCACGGCCCTCTCTATTTCGTCACCACCGTCGCTGATGATGGTCCTGGATCCCTTCGGGATGGATGTCGTAGAAAAGAGCCACTCTGGATTGTTTTTGAAGTATCAGGTACCATTCATCTTTCATCATACTTGAATGTATCATCTTACAAGACAATAGATGGCCGAGGCCAGAGTATAAAGCTCACAGGAAAGGGCTTAAGGCTGAAAGAATGTGAGCATATAATCATATGCAACCTTCAGTTTGAAGGAGGTAGGGGTCATGATGTTGATGGCATTCAAATAAAACCAAACTCTAGGCACATATGGATAGATCGCTGCAGTCTTCGTGATTATGATGATGGGCTTATAGACATTACAAGACAAAGCACAGATATTACTGTATCGAGATGTTACTTTGCCCAGCATGATAAGACCATGCTCATTGGAGCTGACCCATCTCACATTGGCGATAGATGCATACGGGTGACAATTCATCACTGTTTCTTTGACGGGACACGACAAAGACAACCTCGTGTTAGATTTGGAAAAATCCATCTGTACAACAACTACACCAGAAACTGGGGTTTATATGCTGTTTGTGCTAGTGTTGAGTCCCAGATATACTCTCAGTGCAACATTTATGAAGCAGGAACTAAGAAAAAGACCTTTGAATTCTATACGGAGAAGGCTGCAGATAAGGAAGAGCAGAAATCTGGCACCATAATATCTGAAGGAGACATATTTCTGAATGGTGCGGAATCATGCTTACAAACACAACACACAGAAGGAAGCATTTTCCACCCTTCTGAATATTATACAACTTGGACTATGGAAGCACCCTCACATTCTTTTAAAGGTGTTCTCCAGATATGTGCAGGTTGGCAATCTGTTTGTCGGCCGGCAGAAGTCTCTTCTTGTTTGAATTAG	1026	0.4386	MVSKTEANMASLLPYGDVDFSLRAMAGRAEGFGCNSIGGLHGPLYFVTTVADDGPGSLRDGCRRKEPLWIVFEVSGTIHLSSYLNVSSYKTIDGRGQSIKLTGKGLRLKECEHIIICNLQFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRQPRVRFGKIHLYNNYTRNWGLYAVCASVESQIYSQCNIYEAGTKKKTFEFYTEKAADKEEQKSGTIISEGDIFLNGAESCLQTQHTEGSIFHPSEYYTTWTMEAPSHSFKGVLQICAGWQSVCRPAEVSSCLN	341

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3254g00002	341	PANTHER	PECTATE LYASE 18-RELATED	23	297	IPR045032	GO:0030570
	Pral3254g00002	341	PRINTS	Pollen allergen Amb family signature	230	249	IPR018082	-
	Pral3254g00002	341	PRINTS	Pollen allergen Amb family signature	28	45	IPR018082	-
	Pral3254g00002	341	PRINTS	Pollen allergen Amb family signature	208	227	IPR018082	-
	Pral3254g00002	341	SMART	amb_all	55	253	IPR002022	-
	Pral3254g00002	341	Pfam	Pectate lyase	83	246	IPR002022	-
	Pral3254g00002	341	Gene3D	-	17	322	IPR012334	-
	Pral3254g00002	341	SUPERFAMILY	Pectin lyase-like	26	329	IPR011050	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3254g00002	Pral-Chr3254	81969	85908	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3254g00002	50	335	Polysaccharide Lyase	AT3G55140	80.070	0.0	503

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3254g00002	K01728		-	gmx:100802068	597.43

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