Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3252g00004 ATGGCTGAGGAGGAGCCCAAGCCCTTGAACTATATTCCAGAGATTATCTTGAAGAAACGAAAAAGCAGCGAGGCTCTGGCCTTGAGGAAAAAGGATCAACTTCAACAGAAGAAGTTCCAAAAGAATTCCAAGGACTATATCAAAAAGCCTGAGGATTTCATTATTGAGTATCGAAACAAGGAGCTTGACCTTATTAGAATGAACCGACGGGTCAAGAGGATCAAGAAACAACCAGAGCTGTTGATGCCAAATTCAAATTCGAAGTTATTATTAATCATTCGGATACAGGGAAAAAATGACATGCATCCAAAAACCCGAAAGGTCTTGTACAAATTGAATTTGAGAAGAATATTCAGTGCTGTCTTAGTGAGGGCAAGTGTGGGGATTATGGCAAAGCTGCAGAGGGTGGAACCATATGTCACCTATGGGTATCCTAATCTTAAAACCATAAAGGAACTGATCTACAAGAAGGGATTCGCAAAAGTAGACAACCAGAAAGTTCCTCTGACAGACAATAACATTATTGAACAGGCATTAGGAGAGCATGGAATTGTGTGCATAGAAGATATGGTCCATGAAATTGTTAATGTTGGTCGACACTTTGAAGAAGTTGCCAGTTTCTTGTGGCCCTTTGAACTCAACAACCCAGCTGATGGCCTGCAAGGATCGAAAACCTTATACAAGGATGGTGGAGACACGGGGAACCGGGAAGATCTCATCAACGAACTAATCAACAAAATGAATTAA 747 0.4096 MAEEEPKPLNYIPEIILKKRKSSEALALRKKDQLQQKKFQKNSKDYIKKPEDFIIEYRNKELDLIRMNRRVKRIKKQPELLMPNSNSKLLLIIRIQGKNDMHPKTRKVLYKLNLRRIFSAVLVRASVGIMAKLQRVEPYVTYGYPNLKTIKELIYKKGFAKVDNQKVPLTDNNIIEQALGEHGIVCIEDMVHEIVNVGRHFEEVASFLWPFELNNPADGLQGSKTLYKDGGDTGNREDLINELINKMN 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3252g00004 248 Pfam Ribosomal L30 N-terminal domain 13 73 IPR012988 -
Pral3252g00004 248 SUPERFAMILY Ribosomal protein L30p/L7e 89 248 IPR036919 -
Pral3252g00004 248 Coils Coil 57 77 - -
Pral3252g00004 248 CDD Ribosomal_L7_archeal_euk 89 248 IPR035808 -
Pral3252g00004 248 NCBIfam 60S ribosomal protein uL30 13 248 IPR005998 GO:0000463|GO:0003735|GO:0022625
Pral3252g00004 248 FunFam 60S ribosomal protein L7 89 193 - -
Pral3252g00004 248 Gene3D - 89 192 IPR036919 -
Pral3252g00004 248 Gene3D - 193 248 IPR036919 -
Pral3252g00004 248 Pfam Ribosomal protein L30p/L7e 90 140 IPR016082 -
Pral3252g00004 248 PANTHER 60S RIBOSOMAL PROTEIN L7 9 248 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3252g00004 Pral-Chr3252 395760 399056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3252g00004 1 248 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 56.175 2.34e-91 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3252g00004 K02937 - qsa:O6P43_017954 360.147