Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3234g00047 ATGCTGTTGCGGCTTCGCATTCCAGCCTTTTGGTGGTCTCTATGTTCTCTTTCGAACGCCCGTCGGTATCCTCACCCTTCCTCCTCCTTCCAACTCAGCCTTTCTTCTTCAAGCCATCCTCAGGTTTCTGGCATATTGGACGGTGATTGCGATGGTTTCTTGCCATGGTTGGAGCGGAAAGCTGTCTCTAAGATTTCATCAGCACTTTCAATTGGGAAAGCTCCATGTGGCAGGGCTCTGTTTGCCTCTAGGATTATACACACTGGGGAATGCATTTTGCAGGTTCCTTATGCTGTGCAAATGACTGTGGACAATTTACTCCCAGAAATCAGATCTTTGATCAGCACTGAAGTTGGATGTATTTCAAAACTTGCTGTTGTTATTCTAGTTGAGCAGAAACTGGGTCGGGACTCCGAGTGGGACCCTTATATTAGCTGTCTTCCTCAGCAAGGACAGCTGCATAATACAATATTTTGGAGTGAAAGTGAATTGGACATGATTCGGCTAAGCTCAGTGTATCAGGAAACTATCAATCAAAAGTCTCAAATTGAGAAGGACTTTTTGGCAATCAGACCAGTTTTCAAAAGTCTTCTTAAAAGTTTTGGAGAATTTACTTTCAAGGATTTCATGCACGCCTGCACACTTGTTGGTTCTCGAGCATGGGGAAGCATGAAGGGCTTATCTCTGATTCCTTTTGCAGATTTCTTGAATCACGATGGAGATTCAGATTCAATTGTAATGAGCGATGATGACAAACAGTACTCAGAAGTTATTGCTGATCGTGACTATGCTCTTGGTGAACAGGTATTAATAAGATATGGAAAATTTTCTAATGCTACCTTGATGCTGGACTTTGGCTTTACACTTCCATACAACAATTACGATGAGGTCCAGATCCAGCTTGATATACCTAAGCATGATCCTCTGCGTGACCTGAAGATGGAACTCTTGAGGCAATATTTTGTGCGCCCAAACAAAGACGTGAAGGGATTGAGTAACTCTGTCAATTCTTTCATAATCAAGGAAGTGACATCTGCTAAAGGAAAGGGACTTCCACAATCTCTTCGTGCGTTTGCTCGCGTCCTTTCGTGCACCTTTCCTCAAGAACTTGACGATTTGGCCATGGAGGCCGCACAAACTGATGGTAGGCTCGCTAGGCGGCCATTGCGCAATATCAGCAAAGAGATTGAAGCACACCTGCTGTTGTCTTCATTATTCAACAAATTAATTGCCGAGCACTCTGAAGCCATTCTGTCATTGGAATTGTCTAATGCTCCTTCCCTTTCAACAAAACTTGCTGTTAGAAGGAAAATGGCTCGGGATCTCCTAGTTGGTGAGCTTCGCATTCTCAAATCTGCTTCTGCTTGGCTTGACAATTATTGTTCTTCTTTGACTGGACGATCTATTCATTGCTAG 1416 0.435 MLLRLRIPAFWWSLCSLSNARRYPHPSSSFQLSLSSSSHPQVSGILDGDCDGFLPWLERKAVSKISSALSIGKAPCGRALFASRIIHTGECILQVPYAVQMTVDNLLPEIRSLISTEVGCISKLAVVILVEQKLGRDSEWDPYISCLPQQGQLHNTIFWSESELDMIRLSSVYQETINQKSQIEKDFLAIRPVFKSLLKSFGEFTFKDFMHACTLVGSRAWGSMKGLSLIPFADFLNHDGDSDSIVMSDDDKQYSEVIADRDYALGEQVLIRYGKFSNATLMLDFGFTLPYNNYDEVQIQLDIPKHDPLRDLKMELLRQYFVRPNKDVKGLSNSVNSFIIKEVTSAKGKGLPQSLRAFARVLSCTFPQELDDLAMEAAQTDGRLARRPLRNISKEIEAHLLLSSLFNKLIAEHSEAILSLELSNAPSLSTKLAVRRKMARDLLVGELRILKSASAWLDNYCSSLTGRSIHC 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3234g00047 471 Pfam Rubisco LSMT substrate-binding 305 450 IPR015353 -
Pral3234g00047 471 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 50 419 - -
Pral3234g00047 471 Pfam SET domain 77 274 IPR001214 GO:0005515
Pral3234g00047 471 Gene3D - 290 462 IPR036464 -
Pral3234g00047 471 SUPERFAMILY SET domain 50 293 IPR046341 -
Pral3234g00047 471 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 46 287 - -
Pral3234g00047 471 Gene3D set domain protein methyltransferase, domain 1 47 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3234g00047 Pral-Chr3234 690778 714450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3234g00047 124 267 NAC Transcription Factor Family AT3G56570 27.815 4.88e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral3234g00047 SET 5.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3234g00047 K19199 - gmx:100818002 608.216