Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3234g00046 ATGCTGTTGCGGCTTCGCATTCCAGCCTTTTGGTGGTCTCTATGTTCTCTTTCGAACGCCCGTCGGTATCCTCACCCTTCCTCCTCCTTCCAACTCAGCCTTTCTTCTTCAAGCCATCCTCAGGTTTCTGGCATATTGGACGGTGATTGCGATGGTTTCTTGCCATGGTTGGAGCGGAAAGCTGTCTCTAAGATTTCATCAGCACTTTCAATTGGGAAAGCTCCATGTGGCAGGGCTCTGTTTGCCTCTAGGATTATACACACTGGGGAATGCATTTTGCAGGTTCCTTATGCTGTGCAAATGACTGTGGACAATTTACTCCCAGAAATCAGATCTTTGATCAGCACTGAAGTTGGATGTATTTCAAAACTTGCTGTTGTTATTCTAGTTGAGCAGAAACTGGGTCGGGACTCCGAGTGGGACCCTTATATTAGCTGTCTTCCTCAGCAAGGACAGCTGCATAATACAATATTTTGGAGTGAAAGTGAATTGGACATGATTCGGCTAAGCTCAGTGTATCAGGAAACTATCAATCAAAAGTCTCAAATTGAGAAGGACTTTTTGGCAATCAGACCAGTTTTCAAAAGTCTTCTTAAAAGTTTTGGAGAATTTACTTTCAAGGATTTCATGCACGCCTGCACACTTGTTGGTTCTCGAGCATGGGGAAGCATGAAGGGCTTATCTCTGATTCCTTTTGCAGATTTCTTGAATCACGATGGAGATTCAGATTCAATTGTAATGAGCGATGATGACAAACAGTACTCAGAAGTATTAATAAGATATGGAAAATTTTCTAATGCTACCTTGATGCTGGACTTTGGCTTTACACTTCCATACAACAATTACGATGAGGTCCAGATCCAGCTTGATATACCTAAGCATGATCCTCTGCGTGACCTGAAGATGGAACTCTTGAGGCAATATTTTGTGCGCCCAAACAAAGACGTGAAGGGATTGAGTAACTCTGTCAATTCTTTCATAATCAAGGAAGTGACATCTGCTAAAGGAAAGGGACTTCCACAATCTCTTCGTGCGTTTGCTCGCGTCCTTTCGTGCACCTTTCCTCAAGAACTTGACGATTTGGCCATGGAGGCCGCACAAACTGATGGTAGGCTCGCTAGGCGGCCATTGCGCAATATCAGCAAAGAGATTGAAGCACACCTGCTGTTGTCTTCATTATTCAACAAATTAATTGCCGAGCACTCTGAAGCCATTCTGTCATTGGAATTGTCTAATGCTCCTTCCCTTTCAACAAAACTTGCTGTTAGAAGGAAAATGGCTCGGGATCTCCTAGTTGGTGAGCTTCGCATTCTCAAATCTGCTTCTGCTTGGCTTGACAATTATTGTTCTTCTTTGACTGGACGATCTATTCATTGCTAG 1380 0.4348 MLLRLRIPAFWWSLCSLSNARRYPHPSSSFQLSLSSSSHPQVSGILDGDCDGFLPWLERKAVSKISSALSIGKAPCGRALFASRIIHTGECILQVPYAVQMTVDNLLPEIRSLISTEVGCISKLAVVILVEQKLGRDSEWDPYISCLPQQGQLHNTIFWSESELDMIRLSSVYQETINQKSQIEKDFLAIRPVFKSLLKSFGEFTFKDFMHACTLVGSRAWGSMKGLSLIPFADFLNHDGDSDSIVMSDDDKQYSEVLIRYGKFSNATLMLDFGFTLPYNNYDEVQIQLDIPKHDPLRDLKMELLRQYFVRPNKDVKGLSNSVNSFIIKEVTSAKGKGLPQSLRAFARVLSCTFPQELDDLAMEAAQTDGRLARRPLRNISKEIEAHLLLSSLFNKLIAEHSEAILSLELSNAPSLSTKLAVRRKMARDLLVGELRILKSASAWLDNYCSSLTGRSIHC 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3234g00046 459 Gene3D set domain protein methyltransferase, domain 1 47 275 - -
Pral3234g00046 459 SUPERFAMILY SET domain 50 281 IPR046341 -
Pral3234g00046 459 Pfam Rubisco LSMT substrate-binding 293 438 IPR015353 -
Pral3234g00046 459 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 50 407 - -
Pral3234g00046 459 Pfam SET domain 77 243 IPR001214 GO:0005515
Pral3234g00046 459 Gene3D - 278 450 IPR036464 -
Pral3234g00046 459 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 46 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3234g00046 Pral-Chr3234 690778 714450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3234g00046 124 238 NAC Transcription Factor Family AT3G56570 28.099 7.44e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral3234g00046 SET 3.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3234g00046 K19199 - gmx:100818002 579.326