Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3233g00024 ATGGAAGGCTTTGCGTCCAGCTTCAGTCAAGAACATGGCCCCATCAATGGCCGTCTCTGCTTTCATACTGCTACCAACCAATCCTTCTTCTCTGGATCTCTTCCATATTACCAGACGCCGTCAGGTTCAACCGTATGCAATTCGAAATCACCAAAGTCGTCAAATTTGAGCAGCAGGAAGCCATCTATAAATATCACCATCCCTCCCATGGGCTTAAGGATGAGTTCGTCTTCAACATCATCGGATGTCGCAGAGGACAATAACAAGCGCTACCGAGGAGTTCGGCGGCGGCCATGGGGGAAGTTCGCGGCGGAGATTCGTGACCCGAATCGAAAGGGATCAAGGGTTTGGCTTGGAACCTTCGATACAGCCATGGAAGCAGCGAAAGCATACGACAGAGCCGCATTCAAAATGAGAGGAAGCAAAGCTATACTCAATTTCCCTCTTGAGATTGGATCAAGTTCTGAAGAATCTGAGTCGTCAACAGTGGAAAACGTGGTTGGTGAGAAAAGGGAAAGAGAGGAAAAAATTGAACAGAAGAATGAAGAAGAATTTAAGAAGATGAAGAAGGAGGAGGACGAGGCAGCCTCACCCACAGGTGGGGTTGTTTCTTCTGCTGCTGCTGCTGCTTCATCTTCTGTAACGGCTGGTCCATTAACGCCGTCATGCTGGAAGGGATTTTGGGATACTGAGGTTGCCAACACTATTTTCAGTGTTCCTCCGTTATCGCCGTTATCTCCTCCAATGATGGTTGTGAGGTAG 762 0.4829 MEGFASSFSQEHGPINGRLCFHTATNQSFFSGSLPYYQTPSGSTVCNSKSPKSSNLSSRKPSINITIPPMGLRMSSSSTSSDVAEDNNKRYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAMEAAKAYDRAAFKMRGSKAILNFPLEIGSSSEESESSTVENVVGEKREREEKIEQKNEEEFKKMKKEEDEAASPTGGVVSSAAAAASSSVTAGPLTPSCWKGFWDTEVANTIFSVPPLSPLSPPMMVVR 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3233g00024 253 Pfam AP2 domain 90 140 IPR001471 GO:0003700|GO:0006355
Pral3233g00024 253 MobiDBLite consensus disorder prediction 153 218 - -
Pral3233g00024 253 SUPERFAMILY DNA-binding domain 90 150 IPR016177 GO:0003677
Pral3233g00024 253 PANTHER DNA-BINDING DOMAIN 58 190 IPR044808 GO:0003700|GO:0009873
Pral3233g00024 253 MobiDBLite consensus disorder prediction 41 84 - -
Pral3233g00024 253 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Pral3233g00024 253 MobiDBLite consensus disorder prediction 41 88 - -
Pral3233g00024 253 MobiDBLite consensus disorder prediction 163 196 - -
Pral3233g00024 253 MobiDBLite consensus disorder prediction 204 218 - -
Pral3233g00024 253 FunFam Ethylene-responsive transcription factor 2 89 150 - -
Pral3233g00024 253 Gene3D AP2/ERF domain 89 150 IPR036955 GO:0003700|GO:0006355
Pral3233g00024 253 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Pral3233g00024 253 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Pral3233g00024 253 CDD AP2 89 148 IPR001471 GO:0003700|GO:0006355
Pral3233g00024 253 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Pral3233g00024 253 Coils Coil 163 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3233g00024 Pral-Chr3233 440511 441494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3233g00024 28 252 AP2-EREBP Transcription Factor Family AT5G61600 43.805 8.79e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3233g00024 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3233g00024 K09286 - pvy:116146190 191.43