Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3223g00062 ATGGCATTTGAGCCATTAGATTGGTTTTGTCAGCCAGTGCCTAATGGAGTATGGACAAAAGTGGTTCAGAATGCCTTTGGTGCTTATACTCCATGTGCAGTTGATTCTCTTGTGATCATCATTTCGCATTTGGTCCTTTTTGGCTTGTGCTTCTATCGAATATGGTTGATTAACAAGAATTTCAAAGTCAAGAGATATTGTTTGAGGTCAAAGCTTTATAATTATCTTTTGGGGTTGTTAGCTGGATATTGCACTGCAGAGCCGTTATTCAGATTGGTTATGGGACTATCGGTTTTAAATTTAGATGGGAAGACTGGTCTTGCTCCATTTGAGATGGTTTCACTCACCATTGAGGTTCTGGCGTGGTGCTCTATGCTGGTTCTAATCCTTGTTGAAACTAGAGTCTATATCTATGAATTCCGATGGTTTATCAGATTTGGCGTGATTTATACCATGGTGGGGGATGCTGTTGTGATCCATCTCATATTTTCCGCAAAGGAATTCTACACTAGATCGACGTTATATTTATACACAAGTGAGGTTGTCATTCAGGCATTGTTTGGGATATTGCTGCTTGTGTATATTCCTGATTTAGATCCTTATCCTGGTTATGCTCCTATCCAAAGTGAATTGGCCACTGATATTGCTTATGAAGAACTTCCAGGAGGAGAACAAATATGTCCTGAGAGGCATAGCAACATATTTTCAAAAATAACTTTTGCTTGGATGAATCCTATATTGAATTTGGGATATCAAAGACCACTTACTGAAAAAGATGTATGGAAGCTAGATGCTTGGGATCGGACTGAGACTTTGAACAGCAAGTTCCAAAGATGTTGGAATGAGGAATCTCAAAAGCCCAAACCGTGGCTTTTAAGAGCATTAAATAGTAGCCTTGGAGGAAGGTTTTGGTGGGGAGGCTTTTGGAAGATTGGCAATGATGTTTCCCAATTTCTGGGTCCTCTCATATTGAACCAGCTGCTACAGTCTATGCAAAGAGGTGACCCAGCATGGATTGGCTATGTGTATGCCTTCTCAATATTTGTTGGAGTGGTTTTTGGAGTTTTATGTGAAGCTCAATATTTTCAGAATGTCATGCGAGTTGGTTTTCGGCTGAGATCAACTTTGGTGGCAGCTGTGTTTCGCAAATCTTTAAGGCTGACTCATGAAGCCCGAAAACAATTTGCATCGGGGAAAATAACCAATTTGATGACTGCTGATGCTGAGGCACTCCAGCAAATATGTCAGTCACTTCATACTTTATGGTCAGCTCCATTTCGTATCATTGTCGCGCTGGTTCTTCTATTCCAACAACTAGGTGTTGCTTCCCTTCTTGGTGCCTTAATGCTGGTTCTAATGTTCCCTTTACAGACTTTTATCATTAGTAGAATGCAAAAGTGGTACAAGGAAGGGTTGCAGCGTACAGACAAGAGAATTGGCCTCATGAATGAAATTTTGGCTGCTATGGACACTGTAAAATGTTATGCGTGGGAGACTAGTTTCCAATCTAAAGTACAAGCTGTCCGAAATGATGAATTATCATGGTTCCGGAAGGCATCACTACTTCAAGCGTGTAATGGATTTATACTAAACAGCATTCCAGTTTTCGTAACTGTTATTTCATTTGGAGTGTTCACTTTGCTTGGAGGGGATTTAACACCTTCAAGAGCATTTACATCCCTTTCTTTGTTCGCTGTGTTACGGTTTCCCCTCTTCATGCTTCCTAATATGATTACTCAGGTTGTTAATGCCAATGTATCCTTGAAGCGTCTAGAAGACTTGCTCTTAGCAGAAGAACGGATTCTTATGCCTAATCCGCCTCTAGATCCAGCACTTCCAGCCATCTCTCTGAGGAATGGAAACTTTTCATGGGATGCAAAGGCTGGGAGGCCGACATTGTCTAATGTCAATTTGGATGTACCTGTTGGAAGCTTTGTTGCAATTGTGGGCAGTACTGGAGAAGGAAAGACATCACTCATATCTGCGATGCTTGGGGAGCTTCCACCTACTGCAGATGCAACTGTGGTTATAAGAGGGACAGTTGCTTATGTACCACAAATTTCATGGATCTTTAATGCAACCGTGCGGGATAACATTTTATTTGGTTCTCACTTTGACCCTGTGAGATATGAGAAGGCAATAGACGTGAGTGAACTGCAGCATGACCTTGAGTTGCTTCCTGGTGGTGACCTTACTGAAATTGGTGAAAGGGGGGTAAATATCAGTGGTGGTCAAAAACAAAGAGTATCCATGGCTAGAGCTGTCTACTCCAATTCAGATGTGTACATATTTGATGACCCTTTAAGTGCTCTGGATGCACATGTCGCAAGACAGGTGTTTGATAAATGCATCAAAGGTGAATTGAGAGGAAAAACCCGGGTTCTTGTTACAAATCAGCTACATTTCCTTTCACAAGTTGATAGAATTATACTGGTCCATGATGGTATGGTAAAAGAAGAGGGAACATTTGAGGAACTCTTGAACCATGGACCACTGTTCCAAAAGCTTATGGAAAATGCAGGAAAGATGGAAGAATATGCAGAAGAAAACAGAGACGGTGAAAGTAATAATCAAAAGTCCTCTTCAAAATCAGTTCCTAATGGATCACCTAATGATATGGCAAAAGTTGAAAATAAACCAAAAGAAGCCAAATCTGTTCTTATTAAGCAAGAAGAACGAGAAACAGGTGTTATCAGTTGGAAAGTTCTGCAGAGGTACAAGAATGCATTAGGAGGACTTTGGGTGGTGCTAGTACTCTTTGCATGCTATATTTTGACAGAAGTTTTGCGAGTTTCTAGTAGCACATGGTTAAGCTATTGGACTGATCAGAGTGCGTCAGAGGGTTATAATCCTGGTTTCTACAATTTGATATATGCAGCCCTGTCATTTTGTCAGGTTTTGGTGACTTTAACAAATTCTTACTGGCTAATCATATCAAGTCTTTATGCTGCTAAGAGGTTGCATGATGCTATGCTCCACTCCATTTTACGGGCTCCTATGGCATTTTTTCATACCAATCCTCTTGGGAGGATCATCAATAGGTTTGCAAAGGATCTAGGTGATATAGACCGTAATGTTGCTCCTTTTGTGAATATGTTTTTGGGCCAGGTTTCCCAGCTTTTTTCAACGTTCGTCTTGATAGGGATTGTCAGCACATTGTCCTTGTGGGCAATAATGCCATTATTGGTGTTGTTTTATGGAGCCTATCTATATTATCAGAGCATGGCCCGTGAAGTGAAGCGCTTGGATTCTATCAGCAGATCCCCTGTATATGCTCAATTTGGAGAAGCACTTAATGGTCTATCAACTATCCGTGCTTACAAAGCTTATGATCGGATGGCCGATATTAATGGAAAATCCATGGACAATAATATACGATTCAATCTTGTGACCATGAGTGGTAACCGATGGCTTGCAATTCGTCTAGAAACTTTGGGCGGTCTTATGATATGGTTTACTGCATCTTTTGCTGTATTACAAAATGGGAGGGCTGAGAACCAGCAGGCATTTGCATCCACAATGGGGCTACTGCTTAGTTATGCTTTAAATATTACTAGTTTGCTCACTGGAGTGCTCAGACTTGCAAGTCTGGCTGAGAATAGTTTAAATGCAGTTGAGCGTGTGAGTTCGTATATTGATTTGCCTTCAGAGGCTCTACCTATCATTGAGAGCAACCGTCCTCCTCCTGGGTGGCCATCATCTGGATCAATTAGATTCGAAGATGTTGTTCTTCGCTATAGGCCTGAACTTCCACCTGTCTTGCATGGGTTGTCTTTCACAATTTTTCCAAGTGACAAGGTTGGTGTTGTCGGTAGGACAGGAGCAGGAAAAACTAGCATGTTTAATGCTTTATTTCGACTTGTTGAGTTGGAAAGAGGAAAAATCTTAATTGATGACTGTGAAATTGCTAAGTTCGGACTGACTGATTTACGTAAAGTTCTTGGAATTATCCCACAGTCACCTGTTCTCTTTTCAGGAACTGTGAGATTTAATCTTGATCCTTTTAATGAGCATAACGATGCTGACCTTTGGGAAGCTCTGGAGAGAGCTCATTTGAAGGATGTGATTCGAAGGAATTCATTGGGACTGGATGCTGAGGTATCCGAGGGAGGAGAGAATTTCAGCGTTGGCCAGAGGCAACTATTGAGTCTTGCTCGTGCATTATTACGGAGATCAAAGATATTGGTACTTGATGAGGCAACTGCAGCGGTTGACGTCAGAACTGATGCACTTATACAGAAAACAATTCGAGAAGAGTTTAAATCCTGTACTATGTTAATCATAGCTCATCGACTAAATACCATAATTGACTGTGATCGGATCCTTCTGCTCGATGGTGGTCAGGTTCGTGAATATGGAACCCCTGAGGGGCTACTGTCAAATGACGGTAGTGCTTTCTCAAAGATGGTGCAAAGTACTGGAGCTGCAAATGCTCAATATCTACGGAGCTTAGTGCTCAATGGGGATGGTGGAAACAAGCCTACGCAAGAGGAGAAGCATCTTGATGGACAGCGGAGATGGTTAGCTTCGTCTCGCTGGGCAGCTGCAGCACAATTTGCCCTAGCTGTCAGCATGACCTCATCCCAGAATGACCTTCGCCAATTGGAAATTGAAGATGACAACAGTATTCTCAAGACTGCCAAGGATGCCGTGATAACGTTGCAAGGAATTTTGGATGGAAAGCATGATCAAGAAATTGAGCAATCCTTAGATCAACATCAGATATCACCCAACAGATGGTGGTCTTCCCTTTTCAAGATGATTGAGGGCCTGGCTATGCTGAGCAGATTGGCCCGAAACAGACTGCATCAATCTGACTACAATTTTGAAGACACCTCGATAGATTTTGACCATGTTGATATGTAG 4866 0.4174 MAFEPLDWFCQPVPNGVWTKVVQNAFGAYTPCAVDSLVIIISHLVLFGLCFYRIWLINKNFKVKRYCLRSKLYNYLLGLLAGYCTAEPLFRLVMGLSVLNLDGKTGLAPFEMVSLTIEVLAWCSMLVLILVETRVYIYEFRWFIRFGVIYTMVGDAVVIHLIFSAKEFYTRSTLYLYTSEVVIQALFGILLLVYIPDLDPYPGYAPIQSELATDIAYEELPGGEQICPERHSNIFSKITFAWMNPILNLGYQRPLTEKDVWKLDAWDRTETLNSKFQRCWNEESQKPKPWLLRALNSSLGGRFWWGGFWKIGNDVSQFLGPLILNQLLQSMQRGDPAWIGYVYAFSIFVGVVFGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEARKQFASGKITNLMTADAEALQQICQSLHTLWSAPFRIIVALVLLFQQLGVASLLGALMLVLMFPLQTFIISRMQKWYKEGLQRTDKRIGLMNEILAAMDTVKCYAWETSFQSKVQAVRNDELSWFRKASLLQACNGFILNSIPVFVTVISFGVFTLLGGDLTPSRAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRLEDLLLAEERILMPNPPLDPALPAISLRNGNFSWDAKAGRPTLSNVNLDVPVGSFVAIVGSTGEGKTSLISAMLGELPPTADATVVIRGTVAYVPQISWIFNATVRDNILFGSHFDPVRYEKAIDVSELQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIILVHDGMVKEEGTFEELLNHGPLFQKLMENAGKMEEYAEENRDGESNNQKSSSKSVPNGSPNDMAKVENKPKEAKSVLIKQEERETGVISWKVLQRYKNALGGLWVVLVLFACYILTEVLRVSSSTWLSYWTDQSASEGYNPGFYNLIYAALSFCQVLVTLTNSYWLIISSLYAAKRLHDAMLHSILRAPMAFFHTNPLGRIINRFAKDLGDIDRNVAPFVNMFLGQVSQLFSTFVLIGIVSTLSLWAIMPLLVLFYGAYLYYQSMAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDNNIRFNLVTMSGNRWLAIRLETLGGLMIWFTASFAVLQNGRAENQQAFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVSSYIDLPSEALPIIESNRPPPGWPSSGSIRFEDVVLRYRPELPPVLHGLSFTIFPSDKVGVVGRTGAGKTSMFNALFRLVELERGKILIDDCEIAKFGLTDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGQVREYGTPEGLLSNDGSAFSKMVQSTGAANAQYLRSLVLNGDGGNKPTQEEKHLDGQRRWLASSRWAAAAQFALAVSMTSSQNDLRQLEIEDDNSILKTAKDAVITLQGILDGKHDQEIEQSLDQHQISPNRWWSSLFKMIEGLAMLSRLARNRLHQSDYNFEDTSIDFDHVDM 1621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3223g00062 1621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 617 839 IPR003439 GO:0005524
Pral3223g00062 1621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1471 IPR003439 GO:0005524
Pral3223g00062 1621 Pfam ABC transporter transmembrane region 307 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral3223g00062 1621 Pfam ABC transporter transmembrane region 917 1175 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral3223g00062 1621 SUPERFAMILY ABC transporter transmembrane region 286 591 IPR036640 GO:0005524|GO:0016020
Pral3223g00062 1621 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Pral3223g00062 1621 SMART AAA_5 642 833 IPR003593 GO:0016887
Pral3223g00062 1621 SMART AAA_5 1263 1456 IPR003593 GO:0016887
Pral3223g00062 1621 CDD ABCC_MRP_domain1 615 815 - -
Pral3223g00062 1621 Gene3D ABC transporter type 1, transmembrane domain 275 601 IPR036640 GO:0005524|GO:0016020
Pral3223g00062 1621 Gene3D ABC transporter type 1, transmembrane domain 878 1218 IPR036640 GO:0005524|GO:0016020
Pral3223g00062 1621 FunFam ABC transporter C family member 2 880 1218 - -
Pral3223g00062 1621 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 229 1477 - -
Pral3223g00062 1621 ProSitePatterns ABC transporters family signature. 1374 1388 IPR017871 GO:0005524|GO:0016887
Pral3223g00062 1621 Gene3D - 1221 1473 IPR027417 -
Pral3223g00062 1621 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Pral3223g00062 1621 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral3223g00062 1621 FunFam ABC transporter C family member 2 609 855 - -
Pral3223g00062 1621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1464 IPR027417 -
Pral3223g00062 1621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 838 IPR027417 -
Pral3223g00062 1621 MobiDBLite consensus disorder prediction 846 885 - -
Pral3223g00062 1621 Pfam ABC transporter 1254 1402 IPR003439 GO:0005524
Pral3223g00062 1621 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Pral3223g00062 1621 MobiDBLite consensus disorder prediction 857 871 - -
Pral3223g00062 1621 FunFam Multidrug resistance-associated protein member 4 1221 1473 - -
Pral3223g00062 1621 Gene3D - 609 865 IPR027417 -
Pral3223g00062 1621 FunFam ABC transporter C family member 2 279 600 - -
Pral3223g00062 1621 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 917 1200 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral3223g00062 1621 SUPERFAMILY ABC transporter transmembrane region 913 1217 IPR036640 GO:0005524|GO:0016020
Pral3223g00062 1621 CDD ABCC_MRP_domain2 1235 1455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3223g00062 Pral-Chr3223 1579951 1622984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3223g00062 595 831 Calmodulin-binding Proteins AT2G36910 28.906 2.67e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3223g00062 - - gmx:100795004 2710.64