Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral3223g00043 | ATGGAAGCATACGGTGGGTACTTGGTGGATGAGAAAGCTGCTCGGGTTGAGGATGCTTTCCTTGAATTTCTGAAGAGCTTCCGGGTCGGCCAGCAGAGAGAGCCATATTACGAAGCGGAGATTGAAACAATGAGAGCCAACGAATCCAACACGATGTTCATCGATTTCTCGCATGTCATTCTTTATAACGATCTTCTTCAGAAAGCCATCTCTGATGAATACTTGAGATTTGAGCCCTATTTGAAGAACGCTTGCAAGAGGTTTGTTATGGACTCGAAGCCAACCGTCATATCTGACGATAACCCTCACAAAGACATAAACATTGCTTTCTTCAACATCCCAATCGTTAGGAGGTTAAGGGAACTTACTACAGCTGAAATTGGAAAACTGGTGTCTGTGACCGGAGTGGTGACACGGACAAGTGAGGTTCGACCTGAGCTTCTCCAGGGAACTTTCAAGTGCTTAGAATGTGGTGGGATTGTAAAGAATGTTGAACAGCAATTCAAGTATACTGAGCCAGCGGTCTGTCTAAATGCAACCTGTTTAAAGGGGGCAAGGTGGGCATTGCTGCGGCAAGAGAGCAAATTTACTGACTGGCAGAGGGTAAGAATGCAGGAGACATCTAAAGAGATACCTGCGGGATCTCTTCCTAGGTCATTAGATGTTATTCTGCGTCATGAGATTGTGGAACAGGCCAGAGCTGGTGACACGGTGATTTTTACAGGGACTGTGGTTGTCATACCTGATATATTGGCATTGGCGTCTCCTGGAGAGAGAGCTGAATGCCGCCGAGAAGCTTCTCAACGCAAGAGTTCTTCAGTTGGAACTGAAGGTGTGCGGGGTCTTAGGGCTTTGGGAGTCAGGTATCGACTGGCTCCAACTCTGTTCAGACTTAGGTTTATTGCCAACTCTGTTCAGATATGTGATGGAAGAAGAGAGACAGACATCAGGAATAGAAAGAAGGATGCGGATGGCGAAGAGCAGCAATATACAACACAGGAGCTTGATGAAGTTAAGAGAATGAGGAACACTCCAGATTTCTTTAACAAACTTGTTTCCAGCATAGCACCAACTGTCTTTGGTCACCAAGATATCAAGCGAGCAATCCTTCTTATGCTAATGGGTGGAGTACATAAATTTACTCATGAATGCATCAATCTAAGAGGAGATATTAATGTTTGTGTTGTTGGGGATCCTAGTTGCGCCAAGTCTCAGTTTCTCAAATATGCTGCTGGCATAGTTCCAAGATCTGTGTATACATCTGGAAAATCATCCTCTGCTGCTGGCTTGACTGCAACAGTTGCCAAGGAGCCTGAAACTGGGGAGTTTTGCATTGAGGCTGGTGCTTTGATGCTTGCTGACAATGGCATTTGTTGCATTGATGAATTTGACAAGATGGATGTCAGAGATCAGGTAGCAATTCATGAGGCCATGGAGCAGCAGACAATTAGTATCACCAAGGCAGGAATACAAGCCACACTTAATGCACGTACTTCCATTCTTGCAGCCGCCAACCCTACAGGGGGACGATATGACAAGTCTAAACCACTCAAATATAACGTGGCCCTTCCACCAGCTATTTTATCAAGGTTCGATCTGGTATATGTTATGATTGATGACCCAGATGATCAGACAGATTACCACATAGCCCATCACATTGTGAGAGTTCATCAAAAGCGCGAAGAAGCTCTGACTCCATCATTCAGTACAGCAGAACTGAAGCGATATATAGCTTATGCAAAAACTCTCAAACCAAAGCTCAATCCAGATGCCAGACAACTATTAGTAGACTCTTATGTGGCCCTTCGGAGAGGAGATATGAACCCTGGTAGTAGGGTTGCATATCGCATGACTGTTAGGCAGTTGGAGGCATTAATCAGGCTCTCTGAGGCCATTGCACGTTGTCATTTGGAAACTCAGGTGCAACCTCGTCATGTTCGTCTAGCGGTTAGACTGCTGAGCACGTCCATAATAAGTGTGGAGTCCAGCGAAATTGATCTGTCTGAATTTCAAGAAGAAAACCGAGATGACAGCTTGGGTGGTGATGATGGACCTGATAGCAGAAACGATGCTGATGATCAAGGAGGAAGCACTACAGAACAGAAAGATGATGGAACTAAAGGTGAGAGGATGCAGCAGATGGTCCTACCCCTCAACAAGGCAAGAAGCTTATTAAGCGATGAATATTTCCAGAGAGTTACCCAGGCCCTTGTTATGCGCCTTAGACAGCATGAAGAAACTGTTGCACAAGAAGGAACTGGTTTGGCTGGAATGAGGCAACGGGATTTGATCCAGTGGTTATGTGAGCCAAGAGTTACCCAGGCCCTTGTTATGCGCCTTAGACAGCATGAAGAAACTGTTGCACAAGAAGGAACTGGTTTGGCTGGAATGAGGCAACGGGATTTGATCCAGTGGTATGTGAGCCAGCAAAATGAAAATACTTATAGTTCAATGGAGGAGGCAGCTGCGGAAATTACCAAAATTAAAGCTATTATAGAGAGTTTGATTAGAAGGGAGGGCCATTTGATAGTGCTAGATGATGGTAGGCAAGCAGCATCGGAGGCCGCAGGTGCGGAGCACGTGACATCAATCTCCAGAAATGACCGGATCCTGGCTGTGGCTCCAAACTATGTTGTCGATTAA | 2643 | 0.4552 | MEAYGGYLVDEKAARVEDAFLEFLKSFRVGQQREPYYEAEIETMRANESNTMFIDFSHVILYNDLLQKAISDEYLRFEPYLKNACKRFVMDSKPTVISDDNPHKDINIAFFNIPIVRRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGGIVKNVEQQFKYTEPAVCLNATCLKGARWALLRQESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDILALASPGERAECRREASQRKSSSVGTEGVRGLRALGVRYRLAPTLFRLRFIANSVQICDGRRETDIRNRKKDADGEEQQYTTQELDEVKRMRNTPDFFNKLVSSIAPTVFGHQDIKRAILLMLMGGVHKFTHECINLRGDINVCVVGDPSCAKSQFLKYAAGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDVRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREEALTPSFSTAELKRYIAYAKTLKPKLNPDARQLLVDSYVALRRGDMNPGSRVAYRMTVRQLEALIRLSEAIARCHLETQVQPRHVRLAVRLLSTSIISVESSEIDLSEFQEENRDDSLGGDDGPDSRNDADDQGGSTTEQKDDGTKGERMQQMVLPLNKARSLLSDEYFQRVTQALVMRLRQHEETVAQEGTGLAGMRQRDLIQWLCEPRVTQALVMRLRQHEETVAQEGTGLAGMRQRDLIQWYVSQQNEKXTYSSMEEAAAEITKIKAIIESLIRREGHLIVLDDGRQAASEAAGAEHVTSISRNDRILAVAPNYVVD | 881 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral3223g00043 | 881 | Pfam | MCM AAA-lid domain | 572 | 657 | IPR041562 | - | |
| Pral3223g00043 | 881 | Gene3D | - | 119 | 247 | IPR012340 | - | |
| Pral3223g00043 | 881 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 11 | 789 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral3223g00043 | 881 | Gene3D | - | 332 | 662 | IPR027417 | - | |
| Pral3223g00043 | 881 | FunFam | DNA helicase | 332 | 662 | - | - | |
| Pral3223g00043 | 881 | Gene3D | - | 146 | 197 | - | - | |
| Pral3223g00043 | 881 | Pfam | MCM N-terminal domain | 18 | 112 | IPR027925 | - | |
| Pral3223g00043 | 881 | CDD | MCM6 | 350 | 656 | - | - | |
| Pral3223g00043 | 881 | Pfam | MCM P-loop domain | 335 | 557 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral3223g00043 | 881 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 249 | IPR012340 | - | |
| Pral3223g00043 | 881 | FunFam | DNA helicase | 146 | 197 | - | - | |
| Pral3223g00043 | 881 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 74 | 86 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Pral3223g00043 | 881 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 219 | 230 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Pral3223g00043 | 881 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 116 | 128 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Pral3223g00043 | 881 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 278 | 299 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Pral3223g00043 | 881 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 166 | 183 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Pral3223g00043 | 881 | MobiDBLite | consensus disorder prediction | 669 | 709 | - | - | |
| Pral3223g00043 | 881 | Coils | Coil | 819 | 839 | - | - | |
| Pral3223g00043 | 881 | ProSitePatterns | MCM family signature. | 456 | 464 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Pral3223g00043 | 881 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 476 | 489 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral3223g00043 | 881 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 448 | 462 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral3223g00043 | 881 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 500 | 512 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral3223g00043 | 881 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 527 | 535 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral3223g00043 | 881 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 388 | 403 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral3223g00043 | 881 | SMART | mcm | 115 | 658 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral3223g00043 | 881 | Pfam | MCM6 C-terminal winged-helix domain | 771 | 880 | IPR041024 | - | |
| Pral3223g00043 | 881 | Gene3D | - | 8 | 115 | - | - | |
| Pral3223g00043 | 881 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 357 | 658 | IPR027417 | - | |
| Pral3223g00043 | 881 | Gene3D | - | 770 | 881 | - | - | |
| Pral3223g00043 | 881 | MobiDBLite | consensus disorder prediction | 669 | 713 | - | - | |
| Pral3223g00043 | 881 | ProSiteProfiles | MCM family domain profile. | 347 | 553 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral3223g00043 | 881 | Pfam | MCM OB domain | 119 | 247 | IPR033762 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral3223g00043 | Pral-Chr3223 | 1075110 | 1081559 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral3223g00043 | 1 | 881 | Core DNA Replication Machinery Family | AT5G44635 | 69.448 | 0.0 | 1247 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral3223g00043 | K02542 | - | qsa:O6P43_013351 | 1330.08 |