Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3223g00017 ATGACAGCTGGGCAGAAAGTATTATTTGAGTACCATGGAAATAATTATAACTTTACGGTCAGTCAAGCTGTTGTTGAGGACCAAGAGAAGCAGACTTCTCTTGAACGAGGGATGATTTCCGATGACACATACATTATTTTTGAAGCATCACGTGACAGTGGAATTAAGATTGTCAATCAGCGTGAGGCTGCCACTAGCAACATTTTTAAGCAGAAGGAGTTTGATCTTCAGTCTCTGGGTATTGGAGGTCTGAGTGCTGAGTTTGCAGATATATTTCGAAGAGCTTTTGCTTCTCGTGTTTTCCCTCCTTATGTGACATCCAAGCTAGGGATCAAGCATGTGAAGGGAATGCTGCTTTCTGGGCCTCCTGGTACCGGAAAAACTCTAATGGCACGTCAACTAGGAAAAATTTTGAATGGCAAGGAGCCAAAGATTGTCAATGGCCCTAAGGTCTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGGGACCTCTTTGCTGATGCTGAACAAGATCAGAGGACCAAGGGTAATGAAAGTGATTTGCATGTCATCATTTTTGATGAAATTGATGCTATTTGTAAGTCAAGTGGTTCAACTAGGGATGGTACCGGAGTTCATGATAGTATCGTGAATCAACTTCTTACTAAGATAGATGGTGTGGAATCACTGAATAATGTTTTGCTTATTGGAATGACCAACAGAAAAGACATGCTTGATAAAGCTCTTTTAAGACCGGGTCGACTAGAAGTACAGATTGAGATAAGCCTTCCTGATGAAAATGGCCGATTGCAAATTCTTCAAACTCATACTAACAAGATGAAAGAGAACTCTTTCCTCACTTCTGATGTGAATCTTCAAGAGCTTGCTGCCCGAACAAAAAATTACAGCGGTGCAGAACTTGAAGGTGTGGTGAAAAGTGCAGTCTCATTTGCTTTAAATAGACAACTAAGTCTAGATGATCTCACCAAGCAAGTTGAGGAAGAAAATATCAAGGTAACGATGGAGGACTTTTTGAATGCACTCCAAGAAGTTGTTCCCGCATTTGGAGCTTCCACTGATAACCTTCAAAGATGCAGAGTCCATGGCATTGTAGACTGTGGTGATCGGCATAAGCACATTTATCAAAGGGCTATGTTAGTAGCAGAGCAAGTGAAAGTGAGTAGAGGAAGCCCACTTATCACCTGTCTTCTTGAGGGTACTAGTGGCAGTGGCAAAACAGCACTTGCAGCTACTGTTGGTGTTGACAGTGATTTCCCATATGTGAAAATAGTTTCTGCTGAATCAATGATTGGATTACATGAGAGCACTAAATGTGCACAGATTATCAAGGTGTTCGAAGATGCATACAAGTCACCATTGAGTGTCATTGTTCTTGATGACATTGAGAGGTTATTGCAGTATGTGCCCATTGGTCCGCAGTTTTCAAATTTAATTTCACAGACATTATTGGTCTTTCTTAAACGGCTTCCTCCAAAGGGTAAAACACTGCTGGTTATTGGTACGACAAGTGAGTTGGTTTTCTTGGACTCAATTGGATTTTGTGACACTTTCTCTGTTACTTACCATGTTCCTACGTTGAGCACAAATGATGCAAAGAAGGTGCTACGGCAGCTGAATGTTTTTGCCGATGAAGATATGGATGCCGCAGCAGAGGCCTTGAATGATATGCCTATCAAGAAGCTATACATGTTGATTGAGATGGCTGCCCAAGGAGAGCATGGTGGATCTGCAGAAGCCATATATTCTGGCAAAGAGAAGATTCAGATCTCTCACTTCTATGACTGCCTCCAGGATGTTGTTCGTATATAA 1815 0.4143 MTAGQKVLFEYHGNNYNFTVSQAVVEDQEKQTSLERGMISDDTYIIFEASRDSGIKIVNQREAATSNIFKQKEFDLQSLGIGGLSAEFADIFRRAFASRVFPPYVTSKLGIKHVKGMLLSGPPGTGKTLMARQLGKILNGKEPKIVNGPKVLSKFVGETEKNVRDLFADAEQDQRTKGNESDLHVIIFDEIDAICKSSGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDKALLRPGRLEVQIEISLPDENGRLQILQTHTNKMKENSFLTSDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKQVEEENIKVTMEDFLNALQEVVPAFGASTDNLQRCRVHGIVDCGDRHKHIYQRAMLVAEQVKVSRGSPLITCLLEGTSGSGKTALAATVGVDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIVLDDIERLLQYVPIGPQFSNLISQTLLVFLKRLPPKGKTLLVIGTTSELVFLDSIGFCDTFSVTYHVPTLSTNDAKKVLRQLNVFADEDMDAAAEALNDMPIKKLYMLIEMAAQGEHGGSAEAIYSGKEKIQISHFYDCLQDVVRI 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3223g00017 604 ProSitePatterns AAA-protein family signature. 228 246 IPR003960 GO:0005524|GO:0016887
Pral3223g00017 604 SUPERFAMILY Cdc48 domain 2-like 1 62 IPR029067 -
Pral3223g00017 604 FunFam Vesicular-fusion ATPase SEC18 69 259 - -
Pral3223g00017 604 Pfam ATPase family associated with various cellular activities (AAA) 117 257 IPR003959 GO:0005524|GO:0016887
Pral3223g00017 604 Pfam ATPase family associated with various cellular activities (AAA) 398 507 IPR003959 GO:0005524|GO:0016887
Pral3223g00017 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 356 IPR027417 -
Pral3223g00017 604 Gene3D - 1 57 - -
Pral3223g00017 604 Pfam AAA+ lid domain 284 339 IPR041569 -
Pral3223g00017 604 SMART AAA_5 393 514 IPR003593 GO:0016887
Pral3223g00017 604 SMART AAA_5 113 260 IPR003593 GO:0016887
Pral3223g00017 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 568 IPR027417 -
Pral3223g00017 604 Gene3D - 259 346 - -
Pral3223g00017 604 FunFam vesicle-fusing ATPase isoform X1 355 526 - -
Pral3223g00017 604 Gene3D - 355 526 IPR027417 -
Pral3223g00017 604 Gene3D - 67 258 IPR027417 -
Pral3223g00017 604 PANTHER VESICULAR-FUSION PROTEIN NSF 1 603 IPR039812 GO:0016887|GO:0035494
Pral3223g00017 604 CDD AAA 398 505 - -
Pral3223g00017 604 FunFam Vesicle-fusing ATPase 259 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3223g00017 Pral-Chr3223 239606 259839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3223g00017 108 324 Calmodulin-binding Proteins AT3G56690 37.557 3.39e-38 149