Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3223g00016 ATGGCCTTTGGGCACTACCTATCCCAGGGATGGAAACCCAACCCTAGTGATGATGAAAACTCCATGAACGGTTGCTTTGATTGCAACATATGCTTAGACTTTGCTCGCGAACCGGTAGTCACTCATTGTGGCCACCTTTACTGCTGGCCCTGCATCTACAAGTGGCTTCATCTCCAAACTGAGACCTTAACATCTGATGAGCACCCTCAATGCCCAGTTTGCAAAGCTTGTATATCCTCTACCACAATCATCCCGCTCTATGGTCGAGGGCAGGCCTCACTGGCTCAAAGCGAGCGCCACGATGAGAAGGAATCGGATCTGGACATTTCTATACCGCCAAGGCCACCTGCTGCTAGCGTTGAAGCTCCATTGCCATCATCTTCTCCTCATAACACTTATCAGAATCAGCATTCTGCTACTTCTCTAAACCTTGAGAATGCTTCTTCATCACCGCGGGTTGTTAATGTTGGTGCTACCTTGATGCCAGGTTTTCATCATCTTCTGCATGGGATGTTTGGGGAGATGGTGTATGCTAGAGTGTTTGGCAACCCGGAAAATATATACGCCTATCGGAATTCTTATCATGTGCTGGGCCCTAACAGCCCCAGATTGAGAAGACAGGAGATGCAGGCAGACAAATCCTTGAAGAGAGTATCAATTTTCCTGTGTTGCTGCCTTGTTTTGTGTCTTCTAGTGTTTTGA 702 0.4758 MAFGHYLSQGWKPNPSDDENSMNGCFDCNICLDFAREPVVTHCGHLYCWPCIYKWLHLQTETLTSDEHPQCPVCKACISSTTIIPLYGRGQASLAQSERHDEKESDLDISIPPRPPAASVEAPLPSSSPHNTYQNQHSATSLNLENASSSPRVVNVGATLMPGFHHLLHGMFGEMVYARVFGNPENIYAYRNSYHVLGPNSPRLRRQEMQADKSLKRVSIFLCCCLVLCLLVF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3223g00016 233 MobiDBLite consensus disorder prediction 124 138 - -
Pral3223g00016 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 140 IPR013083 -
Pral3223g00016 233 MobiDBLite consensus disorder prediction 94 138 - -
Pral3223g00016 233 CDD RING-HC_AtRMA-like 26 76 - -
Pral3223g00016 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 16 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pral3223g00016 233 MobiDBLite consensus disorder prediction 95 109 - -
Pral3223g00016 233 ProSiteProfiles Zinc finger RING-type profile. 28 75 IPR001841 -
Pral3223g00016 233 Pfam Zinc finger, C3HC4 type (RING finger) 28 74 IPR018957 GO:0046872
Pral3223g00016 233 ProSitePatterns Zinc finger RING-type signature. 43 52 IPR017907 -
Pral3223g00016 233 SMART ring_2 28 74 IPR001841 -
Pral3223g00016 233 SUPERFAMILY RING/U-box 21 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3223g00016 Pral-Chr3223 225811 229116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3223g00016 12 219 C3H Transcription Factor Family AT4G27470 41.096 1.54e-48 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3223g00016 K10666 - gmx:100779793 266.929