Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3216g00001 ATGCAAGAAGCTGGATTGGGAATTATGGGTGGGGGTTTGAGAGGAGAATTGTCCCCGTCCGGTGAGCTCCTCCGGCAGCTGAAGGTGGAGATAGCGGCGCATCCTCTATGTGAGCAGCTTGTGGCCGCCCATGTGGGCTGCCTCCGTGTCGCCACTCCGATCGATCAGCTTCCGCTCATCGACGCTCAGTTATCGCAGTCTCGTCAGCTTCTTCGGTCTTATGCCTCGCTTCACAGTCATTCCCTTTCACCTCAAGATCGCCAAGAACTCGATAACTTCCTGGCACAGTATTTGGTAGTGCTGTGTAGCTTTAAAGAACAGCTTCAGCAGCATGTCAGAATTCATGCGGTGGAGGCTGTTATGGCCTGTCGTGATATTGAAAATACCTTACAAGCTCTCACAGGAGTGACTTTGGGAGAAGGAAGTGGGGCAACAATGTCAGACGATGAAGACGAAATGGCGGTGGATTTCTCAATGGATCAGTCTGGCGTTGAAGGGCATGACATGATGGGTTTTGGTCCATTACTTCCTACAGAATCCGAAAGGTCCCTAATGGAAAGAGTTCGTCAGGAACTAAAGATAGAGCTGAAGCAGGGATTTAAGTCGAGAATCGAAGATGTGAGAGAGGAAATCCTAAGGAAAAGAAGAGCTGGGAAATTACCAGGTGACACTACTACAGTGTTGAAGAATTGGTGGCAACAACATGCTAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCATCTGAAGCAGATTAATAACTGGTTCATCAACCAAAGAAAACGAAACTGGCACAACAACTCGCAGTCTGTCACCTCTTTGAAGTCCAAGCGCAAGAGGCATGTATTTTAA 876 0.4852 MQEAGLGIMGGGLRGELSPSGELLRQLKVEIAAHPLCEQLVAAHVGCLRVATPIDQLPLIDAQLSQSRQLLRSYASLHSHSLSPQDRQELDNFLAQYLVVLCSFKEQLQQHVRIHAVEAVMACRDIENTLQALTGVTLGEGSGATMSDDEDEMAVDFSMDQSGVEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHAKWPYPTEDDKAKLVEETGLHLKQINNWFINQRKRNWHNNSQSVTSLKSKRKRHVF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3216g00001 291 FunFam homeobox protein knotted-1-like 3 isoform X1 212 273 - -
Pral3216g00001 291 SUPERFAMILY Homeodomain-like 213 278 IPR009057 -
Pral3216g00001 291 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 275 - -
Pral3216g00001 291 CDD homeodomain 214 275 IPR001356 GO:0003677
Pral3216g00001 291 Pfam KNOX2 domain 84 134 IPR005541 GO:0003677|GO:0005634
Pral3216g00001 291 ProSiteProfiles 'Homeobox' domain profile. 211 274 IPR001356 GO:0003677
Pral3216g00001 291 Gene3D - 210 286 - -
Pral3216g00001 291 Pfam Homeobox KN domain 231 270 IPR008422 GO:0003677|GO:0006355
Pral3216g00001 291 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Pral3216g00001 291 Pfam KNOX1 domain 27 67 IPR005540 GO:0003677|GO:0005634
Pral3216g00001 291 ProSiteProfiles ELK domain profile. 191 211 IPR005539 GO:0003677
Pral3216g00001 291 SMART HOX_1 213 278 IPR001356 GO:0003677
Pral3216g00001 291 SMART KNOX2_2 80 135 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3216g00001 Pral-Chr3216 38850 44839 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3216g00001 1 287 Homeobox Transcription Factor Family AT1G62990 79.110 8.66e-169 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pral3216g00001 KNOX2 6.5e-18 No_clan