Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3201g00058 ATGGGGAAGCCCGCCGGAAAGAAGAAGGATCTCTCGGACCACAAGGCTACAAATGCAAACGGCAAGAGTGGCAAGCTCTCTGAGCGAACCCCCAAAGCTATTGTTGATGAAGACACAGCTATGTTTATCAACATGTCTCATGAGCTCAAGGAAGAAGGTAACAAACTCTCTCAAAAGAAGGATCACGAAGGCGCTATATTGAAGTATGAGAAGGCCCTCAAACTCCTTCCAAAAAACCACGTAGAAATTGCGCTCCTCCGAAGCAGTATGGCTTGGTGTTATATGCAAATGGGTCTGGGGGAGTACCCCAAAGCAATCAATGAATGTAACTTGGCACTAGAAGTATCACCCAGGTACAGCAAAGCTCTGTTGAGAAGAGCAAAGTGCTATGAAGAGTTGAACCGTTTGGATTTGGCTTTGAGAGATGTTAGTAATGTTTTGAGTTGGGAACCCAATAACCTTACTGCATTGGAGATCCTGGAGAGTTTGAAAAAGACAGTCGAGGAGAAGGGCCTCAACATTGATGAGCAAACGATTGGTTTGACTAGTCCTGGTTCTCGCTTGCGTAATGTGGTCAGAGAGAAACTAAAGAAAAAGAAAAAAAAGAGAGAGACAGACAAGGCAGAGGATAAGGTTGTTGTTGAGGAGAATCTAAGTGCTGCAAAAACTGAAGAAGTGGTGACAAAAACAATTGATAAGGAAAAACTGATTGTGGAACCTGTCAAGGAAGAAACAAAGGTAACAAGGACGGCCAAGTTGGTCTATGGAGAGGATATAAGGTGGGCACAGTTGCCTGTGAATTGTAGTCTGAAATTGGTAAGGGATATTATTAGGGATCGCTTTCCTGGCTTGAAAGGTGTTCTTGTGAAATATAAAGATCAAGATGGTGACTTGGTCACAATCACTACCACTGAGGAACTAAGGCTAGCTGAATCTTCCGGTCATGTGCTAGGCTCGATTCGACTCCATATCACAGAAGTTGATCCAAGCCAGGAACCACCTTATGAAGAACTAACCGGTGAAAAACAGGTGCGAACAGATGATGCTATCAAGCGGAATTGTCCTACGGAAGAAGGCAAAGATATTGTAACAAAAAGGACGACCACTGTGGAGGAGTGGATTGTTCAATTCGCAAGGCTGTTTAAGAATCATGTTGGGTTTGATTCTGATGGATATTTGGATCTTCATGAGATAGGAATGACGCTGTATACAGAAGCAATGGAGGATAGTATAATATGTGATGAAGCTCAAGAACTTTTTGATATTTCTATAGATAAATTTCAAGAGATGGCTGCTTTAGCAATGTTTAACTGGGGGAATGTTCACATGTCCAAGGCGAGGAAGCGTGCTTCCATTTCAGAGGACGCGTCAAGAGAATCTTCTTTCGAGAATATTAAAGCCGCATATGAGTGGGCACAAAAGCAATACAAGCTAGCAGAAAGGAGGTACGAAGAAGCTGTGAAAATCAAACCAGACTTCTGTGAAGGTTTTCTCGCTCTTGGGCATCAACAATTTGAACAAGCAAAGCTGTGCTGGTACTATGCAATCGCATGCAAGAAGGATCTTGAATCAGGGCCTTCTGATGAGGTTTTACAACTCTATAACAAGGCAGAGGACAGCATGGAGAAAGGCATGTTGATGTGGGAGGAGATGGAGGAACAGCGCTTAAATGGACTGTCCAGATCAGAAAAATATAAAGCTCAATTGGAGAAAATGGGTTTGGATAGCATTTTCAAGGATGTTTCTTTTGATGAAGCTACAGAGCACGCTGATAACATGAGGTCACAGATAAATCTTTTATGGGGCACTTTATTGTATGAACGTTCTGTTGTAGAATACAAGTTAGGCCTACCCACATGGGAGGAATGTTTGGAGGTTTCAGTTGAAAAATTTGAACTTGCTGGAGCTTCTCAAACTGATATTGCAGTTATGATAAAAAATCATTGTTCCAATGTCACAGCACTGGAAGGTTGGGGATTCAAAATTGATGAGATAGTACAGGCGTGGAACGAGATGTACGATGCTCAAAGGTGGCAATTTGGAGTCCCATCGTTTCGACTTGAACCACTGTTTCGTCGGCGAGCCCCGACACTCCATTACTTGTTGGAGCAAATTTGA 2118 0.4278 MGKPAGKKKDLSDHKATNANGKSGKLSERTPKAIVDEDTAMFINMSHELKEEGNKLSQKKDHEGAILKYEKALKLLPKNHVEIALLRSSMAWCYMQMGLGEYPKAINECNLALEVSPRYSKALLRRAKCYEELNRLDLALRDVSNVLSWEPNNLTALEILESLKKTVEEKGLNIDEQTIGLTSPGSRLRNVVREKLKKKKKKRETDKAEDKVVVEENLSAAKTEEVVTKTIDKEKLIVEPVKEETKVTRTAKLVYGEDIRWAQLPVNCSLKLVRDIIRDRFPGLKGVLVKYKDQDGDLVTITTTEELRLAESSGHVLGSIRLHITEVDPSQEPPYEELTGEKQVRTDDAIKRNCPTEEGKDIVTKRTTTVEEWIVQFARLFKNHVGFDSDGYLDLHEIGMTLYTEAMEDSIICDEAQELFDISIDKFQEMAALAMFNWGNVHMSKARKRASISEDASRESSFENIKAAYEWAQKQYKLAERRYEEAVKIKPDFCEGFLALGHQQFEQAKLCWYYAIACKKDLESGPSDEVLQLYNKAEDSMEKGMLMWEEMEEQRLNGLSRSEKYKAQLEKMGLDSIFKDVSFDEATEHADNMRSQINLLWGTLLYERSVVEYKLGLPTWEECLEVSVEKFELAGASQTDIAVMIKNHCSNVTALEGWGFKIDEIVQAWNEMYDAQRWQFGVPSFRLEPLFRRRAPTLHYLLEQI 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3201g00058 705 SMART PB1_new 248 327 IPR000270 GO:0005515
Pral3201g00058 705 SMART tpr_5 46 79 IPR019734 GO:0005515
Pral3201g00058 705 SMART tpr_5 84 119 IPR019734 GO:0005515
Pral3201g00058 705 SMART tpr_5 460 493 IPR019734 GO:0005515
Pral3201g00058 705 SMART tpr_5 120 153 IPR019734 GO:0005515
Pral3201g00058 705 SUPERFAMILY TPR-like 42 163 IPR011990 GO:0005515
Pral3201g00058 705 Gene3D Tetratricopeptide repeat domain 408 579 IPR011990 GO:0005515
Pral3201g00058 705 Coils Coil 191 211 - -
Pral3201g00058 705 Gene3D Tetratricopeptide repeat domain 43 171 IPR011990 GO:0005515
Pral3201g00058 705 PANTHER PROTEIN CLMP1 1 703 IPR044517 -
Pral3201g00058 705 Gene3D - 236 326 - -
Pral3201g00058 705 Pfam PB1 domain 249 325 IPR000270 GO:0005515
Pral3201g00058 705 ProSiteProfiles TPR repeat profile. 120 153 IPR019734 GO:0005515
Pral3201g00058 705 SUPERFAMILY TPR-like 414 667 IPR011990 GO:0005515
Pral3201g00058 705 ProSiteProfiles TPR repeat profile. 46 79 IPR019734 GO:0005515
Pral3201g00058 705 SUPERFAMILY CAD & PB1 domains 248 337 - -
Pral3201g00058 705 MobiDBLite consensus disorder prediction 1 16 - -
Pral3201g00058 705 ProSiteProfiles PB1 domain profile. 248 327 IPR000270 GO:0005515
Pral3201g00058 705 MobiDBLite consensus disorder prediction 1 30 - -
Pral3201g00058 705 CDD PB1 256 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3201g00058 Pral-Chr3201 268231 271206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3201g00058 36 153 Calmodulin-binding Proteins AT3G25230 31.496 2.38e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3201g00058 K26538 - qsa:O6P43_015720 1060.06