Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3201g00035 ATGAGCAGTCTGGTCGAGAGGCTTCGAGCAAGAACAGATCGCAAGCCCATCTACAGCATTGATGAATCAGACGATGAAGCTGATATTTTGCCCGGGAAACACGAGCCAACTCAGGAAAAGTTTGAGAGGATAGTCAGAAGTGATGCGAAAGAAAATAGTTGTCAAGCTTGTGGAGAAAATGGAGATATTTTAAACTGTGAAACATGCAATTATGCCTATCATCCTAGGTGTTTACTTCCACCACTTAGAGCTCCTGCTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGACTGTGAGATGCGCCCTACTGTAGCTGATGACAGTGATGCCACAAAACTGGGGTCAAAACAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGGCTATCATATCTCCATTGCACATGGGTGCCAGAAAAGGAGTTTCTGAAAGCCTTCAAATTACATCCTCGCCTAAAGACGAAAGTAAATAACTTCCATCGTCAAATGTCATCAGTTAATACTTCTGATGAAGACTATGTTGCCATTCGACCTGACTGGACAACTATTGATCGGATTATTGCTTGCAGGGGTGACGATGATAAGGAATATCTTGTGAAATGGAGAGAGCTTTCATATGATGAATGCTATTGGGAGTTTGAGTCTGATATTTCTGAGTTTCAGGCAGAAATTGAAAGATTCAATAGATTTCAGTCTAGGTCTAGGAAACTCGTTTATTCTAATAAGCAGAAAGGCAATGTTAAGGATGGCGCAGAACTGATGAAGCATCAGAAAGAATTTCATCAGTATGAGCATAGCCCTGAATTTCTTTCAGGGGGTACCCTACATCCATATCAACTTGAAGGCTTAAACTTTTTACGTTTCTCGTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAAAGTATTGCTTTCTTGGCATCTCTTTTTGAAGAAAATGTTTCTCCACACTTGGTGGTTGCTCCACTTTCAACATTGCGAAACTGGGAACGTGAATTTGCAACTTGGGCACCACAAATGAATGTTGTTATGTATGTTGGATCTTCCCAAGCCCGTGCCGTTATACGTGAGTATGAATTTTACTTTCCAAAGAGCCAGAAGAAGTTAAAGAAAAAGAAATCTGGTCAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGATGTCCTCTTGACATCATATGAGATGATCAACCTTGACACATCATCATTGAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAGTTATTTTCTTCACTGAAGCAATATTCTAGCCGACATCGTGTGCTTTTGACTGGCACTCCTCTGCAGAACAACTTGGATGAACTTTTTATGCTCATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAATTTCAGGAAGAGTTCAAGGACATCAATCAAGAGGAGCAGATTTCAAGGCTTCACAAAATGTTGGCCCCCCATCTTCTTAGAAGGGTCAAGAAAGACGTCATGAAGGAATTACCTCCGAAAAAGGAACTTATTTTACGTGTTGAATTAAGCAGCGAACAGAAAGAGTATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGAGCTCAGATTTCTCTTATCAATGTTGTTATGGAGTTGCGAAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAGCCAGATATTCAAGATGCAAAAGAATCTCACAAAAAGCTGCTGGAATCATCAGGGAAGTTGCAATTGTTAGACAAAATGATGGTGAAGCTTAAAGAGCAAGGGCATAGAGTCCTCATATATTCACAATTTCAGCGCATGCTGGACTTGCTTGAAGATTACTGTTCTTACAAGAAGTGGCAGTATGAAAGGATAGACGGCAAGGTTGGTGGAGCTGAAAGACAAGTACGAATAGATCGGTTTAATGCCAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTTGCAACAGCTGACACAGTTATTATATACGATAGTGATTGGAACCCGCATGCTGATCTACAAGCCATGGCTAGGGCTCATCGACTTGGACAAACTAATAAGGTGATGATTTACAGGCTTGTAACACGGGGAAGCATTGAAGAAAGAATGATGCAGATGACGAAGAAGAAAATGGTGCTAGAACATCTTGTTGTTGGAAGGCTAAAATCTCAAAATATTAACCAGGAGGAGTTGAATGATATTATAAGGTATGGCTCCAAGGAGTTATTTGCTGATGAGAACGATGAAGCAGGCAAATCACGCCAAATCCACTATGATGATGCTGCCATAGATAGACTGCTGGATCGGGAACAAGTTGGTGATGAAGAGGCTACAATGGATGATGACGAGGATGGATTTCTGAAGGCTTTTAAGGTGGCGAATTTCGAATATATTGATGAAGTCGAGGCTGCAGCCGAGGAGGCAGCGAAAAAGAGAGCTATGGAGAATGAATCCGCTGTGGCAAGCACAGAAAGAGCAAAATACTGGGAAGAGTTGTTAGGAGACAGATATGAAATGCATAAGGTTCAAGAGTTGGACGCCTTGGGCAAAGGGAAGCGGAGTCGTCACAAGCAGATGGTCTCTGTTGAGGATGATGATCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGATGACAATGTTGATGCGGAGCTTACTGATGGTGATTCAAATTCGAATGGAACTATTTCTAAAAGACCTTATAAAAAGAGAGCCCGTGCGGATAGCACAGAGCCACATCCTCTGATGGAAGGTGAAGGAAAATCATTTCGAGTGCTTGGTTTTAATCAGAATCAGAGAGCTGCATTTGTGCAAATTCTGATGAGGTTTGGGATGGGTGACTATGACTGGAAGGAGTTCACTTCCCGAATGAAACAGAAGACTTGTGAAGAAATCAAAGCATATGGAATCCTTTTCCTCAATCATATTATTGAAGATATAACCGATGCCTCTACATTCTCAGATGGCGTTCCAAAAGAAGGACTTAGAATTCAGGACGTACTTGTGAGGATTGCGATTCTGGGCTTGATAAGGGAAAAGGTGAAGTTTGCATCAGAAAACCCTCGGACTCCGCTCTTTTCAGATGAAGTCTTATTTCGCTATCCCAGTTTGAAGGGTGCAAAGTTTTGGAAGGAGGAGCACGATTTAGTGCTGCTGCGTGCTGTGTTGAAGCACGGATATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCATGAGATCATCTGTCAGGAGTTGAACCTTCCCTTAATAAATATACCAGTACCAGGACAAGTAGGCTCTCAGGCACAAAATAATGCAAATTTGTCCAACGCAGAAGCAGCCAGCAATCAATCTCAGGAAAATGATGGGAGTGTCAAAGCACCTGATGGTGCGCTTGTTTCTGGGGATGCTAGGAGCCAATCACTTTTATATCAAGAGTCCTCCATATTATATCATTTTAGAGACATGCAAAGAAGACTGGTTGAGTTTATAAAAAAGAGGGTGCTTCTCTTGGAAAAAGGGGTCAATGCAGAGTATCAGAAAGAATGCTTAGGTGAAGTAAAAGTAAATGAAGTAACAAACAATGGACTTAATTGTGAACGCAAGGCTGCAGGTGTGCCTGCTAATAAATCAGGGGAGACAGACACCCAAATGTCTGATCAGCTGCCTCAAGTGGAAGCTATAGCTTCAGACGGGATTTCTGTTGCTGATAGTGATCCAAATCGTTTGGAATTGATTCGGCTTTACAATGAGATGTGTAAAGTCATGGAAGAAGACATCGATGCAAGAAAACCAGCAGAAGTTGACGTGAAGAAATTGCTGGCAATAGAGCCCATTTGTGAAGACATCAGCAGAATTCTAACACCCTTGCAGGAAAGTCACCCTTCGGAAGAAAAGCCATTATTGATTCCAGAGAATAAATCAGAGGTTTCGCCACAAAATGAAATTGTGGTTTCTCAAGATGGCAAACCTAAATCAGTAGGTGACGGGAGAACAGATCTGGTGATGGAGGATCAACTTGCAAAAGAAAACAACACGGGCCCTGTCGAAGAGAAGGAAACACCGAGTCCTGTAGAAACAATGGGAAGTGATGTAGAAATGAACGAAGCTGAGAATGATGCTGAACTGAATGAAAAGAAAGAAAAATCTGACGCAGACGTCATCTTGTTGGATGATTAA 4287 0.414 MSSLVERLRARTDRKPIYSIDESDDEADILPGKHEPTQEKFERIVRSDAKENSCQACGENGDILNCETCNYAYHPRCLLPPLRAPAPDNWRCPECVSPLNDIDKILDCEMRPTVADDSDATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKLHPRLKTKVNNFHRQMSSVNTSDEDYVAIRPDWTTIDRIIACRGDDDKEYLVKWRELSYDECYWEFESDISEFQAEIERFNRFQSRSRKLVYSNKQKGNVKDGAELMKHQKEFHQYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQARAVIREYEFYFPKSQKKLKKKKSGQIVSESKQDRIKFDVLLTSYEMINLDTSSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSEQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIQDAKESHKKLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQRMLDLLEDYCSYKKWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLVTRGSIEERMMQMTKKKMVLEHLVVGRLKSQNINQEELNDIIRYGSKELFADENDEAGKSRQIHYDDAAIDRLLDREQVGDEEATMDDDEDGFLKAFKVANFEYIDEVEAAAEEAAKKRAMENESAVASTERAKYWEELLGDRYEMHKVQELDALGKGKRSRHKQMVSVEDDDLAGLEDVSSDGDDNVDAELTDGDSNSNGTISKRPYKKRARADSTEPHPLMEGEGKSFRVLGFNQNQRAAFVQILMRFGMGDYDWKEFTSRMKQKTCEEIKAYGILFLNHIIEDITDASTFSDGVPKEGLRIQDVLVRIAILGLIREKVKFASENPRTPLFSDEVLFRYPSLKGAKFWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLKIHEIICQELNLPLINIPVPGQVGSQAQNNANLSNAEAASNQSQENDGSVKAPDGALVSGDARSQSLLYQESSILYHFRDMQRRLVEFIKKRVLLLEKGVNAEYQKECLGEVKVNEVTNNGLNCERKAAGVPANKSGETDTQMSDQLPQVEAIASDGISVADSDPNRLELIRLYNEMCKVMEEDIDARKPAEVDVKKLLAIEPICEDISRILTPLQESHPSEEKPLLIPENKSEVSPQNEIVVSQDGKPKSVGDGRTDLVMEDQLAKENNTGPVEEKETPSPVETMGSDVEMNEAENDAELNEKKEKSDADVILLDD 1428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3201g00035 1428 MobiDBLite consensus disorder prediction 940 955 - -
Pral3201g00035 1428 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 771 IPR001650 -
Pral3201g00035 1428 CDD CD1_tandem 98 172 - -
Pral3201g00035 1428 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
Pral3201g00035 1428 SMART helicmild6 638 722 IPR001650 -
Pral3201g00035 1428 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Pral3201g00035 1428 MobiDBLite consensus disorder prediction 1362 1385 - -
Pral3201g00035 1428 Gene3D - 98 188 - -
Pral3201g00035 1428 MobiDBLite consensus disorder prediction 1408 1428 - -
Pral3201g00035 1428 CDD SF2_C_SNF 607 733 - -
Pral3201g00035 1428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 519 IPR027417 -
Pral3201g00035 1428 SMART DUF1086_2 914 1070 IPR009462 GO:0003677|GO:0006338
Pral3201g00035 1428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 97 IPR013083 -
Pral3201g00035 1428 SMART PHD_3 53 96 IPR001965 -
Pral3201g00035 1428 ProSiteProfiles Chromo and chromo shadow domain profile. 192 253 IPR000953 -
Pral3201g00035 1428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 779 IPR027417 -
Pral3201g00035 1428 SUPERFAMILY Chromo domain-like 175 241 IPR016197 -
Pral3201g00035 1428 MobiDBLite consensus disorder prediction 887 955 - -
Pral3201g00035 1428 MobiDBLite consensus disorder prediction 1146 1160 - -
Pral3201g00035 1428 Pfam PHD-finger 54 96 IPR019787 -
Pral3201g00035 1428 Gene3D - 189 240 - -
Pral3201g00035 1428 SMART DUF1087_2 842 908 IPR009463 -
Pral3201g00035 1428 Coils Coil 837 857 - -
Pral3201g00035 1428 MobiDBLite consensus disorder prediction 904 924 - -
Pral3201g00035 1428 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Pral3201g00035 1428 SMART ultradead3 282 495 IPR014001 -
Pral3201g00035 1428 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 156 IPR023780 -
Pral3201g00035 1428 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 240 IPR023780 -
Pral3201g00035 1428 Gene3D - 1037 1165 - -
Pral3201g00035 1428 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Pral3201g00035 1428 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Pral3201g00035 1428 MobiDBLite consensus disorder prediction 1326 1428 - -
Pral3201g00035 1428 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Pral3201g00035 1428 SMART chromo_7 190 243 IPR000953 -
Pral3201g00035 1428 SMART chromo_7 99 168 IPR000953 -
Pral3201g00035 1428 CDD CD2_tandem 190 240 - -
Pral3201g00035 1428 Pfam CHD subfamily II, SANT-like domain 936 1067 IPR009462 GO:0003677|GO:0006338
Pral3201g00035 1428 Pfam CHD subfamily II, DUF1087 843 905 IPR009463 -
Pral3201g00035 1428 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 32 1378 - -
Pral3201g00035 1428 Pfam SNF2-related domain 306 586 IPR000330 GO:0005524|GO:0140658
Pral3201g00035 1428 Gene3D - 278 528 IPR038718 -
Pral3201g00035 1428 Gene3D - 529 753 IPR027417 -
Pral3201g00035 1428 MobiDBLite consensus disorder prediction 1146 1167 - -
Pral3201g00035 1428 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Pral3201g00035 1428 MobiDBLite consensus disorder prediction 887 903 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3201g00035 Pral-Chr3201 145898 161672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3201g00035 308 749 RAD5 or RAD16-like Gene Family AT1G02670 22.605 1.05e-29 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral3201g00035 SNF2_N 8.1e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3201g00035 K11643 - gmx:100804203 2221.82