Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3199g00006 ATGGCTTCCAAGCTCTGTGACTCCTGCAAGTCCGCCACCGCCACCCTCTTCTGCCGCGCCGACTCCGCCTTCCTCTGCGTCGGCTGTGACTCCAAGGTCCATGCCGCCAACAAGCTCGCTTCCCGCCACGCGCGTGTCTGGGTCTGCGAGGTCTGTGAGCAAGCCCCTGCTCACGTCACCTGCAAGGCAGACGCTGCTGCTCTCTGCATCACCTGCGACCATGACATCCACTCTGCTAATCCACTCGCTCGTCGTCACGAGCGCGTCCCCGTAACTCCCTTCTATGATCCCGTCCACTCCGTTGGTGTCCCGTCTGGCGCTGCCATCAACTTCCTCAATGACCGTTACTTCTCCGACGCCGATGCAGACGCTGATGTCAGCAGGGAAGAGGCGGAAGCGGCTTCCTGGTTGCTGCCTAACCCTTCCAACCCGAAGGCCGTGGAGAGCCCAGATCTGAACTCTGGTGAGTACGTGTTTCCCGAAATGGAGCCATGCCTAGATCTGGATTTCGGGCCGGTGGATCCGAAGGTGGAATCTCAGGAGCAGAACAGTTCCGGCACAGACGGTGTTGTGCCGGTACGGAGCAAGAGTGCACAGATTCCATCCCTCAACGACCACTACTACGACATGGAATTGACTGGGTCCAAGAATTTCACCTGCGGCTACAACGGCAGCCAGTGCCTGAGCCAGAGTGTGTCGTCGTCTTCCATGGATGTCGGGGTGGTTCCTGATGGGAATGCGATATCAAACGGTTACAGCAAGACGATTATAGGGAGTGATAATCAGCCGGTGCAGATATCAGCTGCAGACAGGGAAGCGAGGGTATTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACCATTCGGTACGCTTCCAGAAAAGCGTACGCGGAAACAAGACCCAGAATCAAAGGCAGATTCGCAAAACGATCGGAGGTGGACCGCTTCGGAGGATACGGCGTCGTACCAAGCTGTTGA 987 0.5704 MASKLCDSCKSATATLFCRADSAFLCVGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCITCDHDIHSANPLARRHERVPVTPFYDPVHSVGVPSGAAINFLNDRYFSDADADADVSREEAEAASWLLPNPSNPKAVESPDLNSGEYVFPEMEPCLDLDFGPVDPKVESQEQNSSGTDGVVPVRSKSAQIPSLNDHYYDMELTGSKNFTCGYNGSQCLSQSVSSSSMDVGVVPDGNAISNGYSKTIIGSDNQPVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSEVDRFGGYGVVPSC 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3199g00006 328 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Pral3199g00006 328 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 316 IPR045281 GO:0009909
Pral3199g00006 328 CDD Bbox1_BBX-like 5 48 - -
Pral3199g00006 328 SMART bboxneu5 49 91 IPR000315 GO:0008270
Pral3199g00006 328 SMART bboxneu5 1 48 IPR000315 GO:0008270
Pral3199g00006 328 Pfam CCT motif 271 313 IPR010402 GO:0005515
Pral3199g00006 328 ProSiteProfiles CCT domain profile. 271 313 IPR010402 GO:0005515
Pral3199g00006 328 CDD Bbox1_BBX-like 48 91 - -
Pral3199g00006 328 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Pral3199g00006 328 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Pral3199g00006 328 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3199g00006 Pral-Chr3199 45742 47108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3199g00006 1 327 C2C2-CO-like Transcription Factor Family AT5G24930 61.602 3.71e-138 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pral3199g00006 zf-B_box 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3199g00006 - - pcin:129317838 624.009