Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3199g00003 ATGGTTTGTGAGATGGAGAATGACCATATCGAGGACATGGACATTGAAATCCTCCATTCAATGTGGCCTGAAGATATTGAAACCGATGTTGGAAAAAAATTTAATATAGAAAAGCCTGGAAAGGACGAAGACATGTTGGAAGAGATTATAATCATGGAGGAGTCAACCATAGTTGATTTCAAGCGTCTCATGGAGCTCACAAATTATACAGATAAGGGCTCTTCTCAACTGTCCCACCTTGTGAAACACTTGGAGTATAAGCAGGCCAATGCTGTGCGCCTTCTTAGAGAAGAACTTGACAACCTAAGCAAACAGAGGCGAGAGGTTGAACTAAGGAAGTTGGAGATATTGGAGGAGCATCGATTTGAAGAAGGAGCGTATGGGGACAAACGTACAGTTTCTATTTTGGATGACATATATGATATATGGCAAGATGTACCACGTAGGAAATGCAACGTTGTTGTTCAAAACAAGATAATTGAAATAAATGCTGAGTATGATACAACTGTGTATTGGAAACAGCGGGCTCTGCATTTGGAAAAAATGCTGGAGGAAAGTGTACAAAGGGAGCAGATACTTGCAGAGAAGTTGCAAGAAAGTATAAAGAATCTTGAAAAGCAGTCCTCACCTGTAGAAGAACTGTCCCAGATTCTGAAAAGAGCAGATAATTTCTTACATTTTGTACTCCAGAATGCACCTGTGGTTATTGGTCATCAGGACAAAGAGCTGCGATATCGATTTATCTATAATCATTTTCCAAGTTTGCACGAGGAGGACATCATTGGAAAAACAGATGTTGAAATTTTTACAGGATCTGGCGTTAAAGAATCTCAAGATTTTAAGAGAGAAGTTCTAGAAAAAGGCTTGCCTGCGAAAAGGGAAATTACTTTCGAGACAGAATTATTTGGGTCAAAGACATTCTTGATTTATGTAGAACCTGTCTTCAGCAAGACGGGGGAGACGCTAGGAATAAACTATATGGGAATGGATGTCACCGATCAGGTGAGAAAAAGAGAAAGGATGATGAAGATCCGGGAAGAAATCGCGGTTCAGAAAGCCAAGGAGACAGAACTGAATAAAACCATCCACATTACAGAGGAGACTATGAGAGCAAAACAAATGTTGGCAACCATGTCTCATGAGATAAGATCCCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTAGGACAAAACTTGATCGCGAGCAAAGACAACTCTTGGGTGTCATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTAGAAGCAACCAAGTTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACTGCTGCAGCTTCACTGCGGAAAAAATTAACATTAGAAGGACATGTAGCAGATGATGTACCTGCTGAGGTGATTGGAGATGTTTTAAGGATTCGGCAAATCCTCACAAATTTAGTCAGCAACGCCGTCAAGTTTACTCATGAAGGCAAGGTTGGTATAAATCTTTACGTTGTGCCAGAGCCATCTTTTTCTAAAGCAGAAGCAAGCCTCCAGAAGACTAGTATAGACCAGTCTAGTATTCGCGGGAATGGAGTAGAAGATAAGTTTCTCTCAACACCTCAAAATAGCAGTAACCAAAATCATGCATCGAGTGATGAAGATAGATCTTCAGTTAAAAGCGAATGCTTAATGAATGGAGGTACTGAGGAGCAGCCTCGCTCAACTGAAACAACAGTGTGGATACGTTGTGATGTCTATGACACAGGAATTGGAATACCAGAGAAGGCTCTACCTACTTTATTTAAAAGGTACATGCAAGTCAGTGCAGACCATGCAAGAAAGTATGGTGGGACAGGGCTGGGACTAGCAATATGTAAACAACTGGTTGAGTTAATGGGTGGTCGTCTTACTGTGACTAGCAAAGAACACAGTGGTTCTACATTTACCTTCATATTGCCATACAAGATTTCAACGATTTGTGATCATTCTGACGAGCCCTCAGATACAGAGGATGATGATGATGCTGCATCCGATGATACAACAGAGGGCTTCTTCCAATTTCAACCAGCCACTTCGGGCTCTCTGTTCTCCTCCTATGGATCTAGCAGGACCCAGACGTTATTACCTCAAAAAATTGGGTGTGCAACCTCGCATAAATTCAATGGATTTTCAGAGAATTCATACTCAGTTTCCTCTAATGATGTCAAATCGAAGGAAATAACTTCAGTTGAGGGTGTATCCTCAATAACTGATTGCCCGGATATATCTGAATGTGCATGTTCATCGGGTCATGGCCCAGAGATAGAGGACGAAAATGTAAATACAAGAAACAAATCAGGGAATGACAGTGCGCATTCTTCCTATCACACGGAAGTTGATCAAGGTCGGGCAACTATAGCAACAATGTCAAGAGAACAAGCACATCAGAGTCAAGAAAGAGCAGAGATTGTCTCGCAATGCGTCACTGGCAGCAGTTCAGAAGTAGCAAAACCAAATTTAACACCTAAGATCCTTCTCGTTGAGGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAAGCAATTAGGTCATAGCATGGATGTTGTGAATAATGGAGTGGAAGCTGTACGTGCAGTTCAGCGCCAGAGTTATGACCTAATTCTTATGGATGTGTGCATGCCAGTTATGAATGGTCTGCAAGCAACAAAACTGATTCGTTCTTTTGAAGAAACGGGTAACTGGGATGCTGCAAGAGAAGTTGGAATTGAGCTAAATCCACCAGCTTCATGTTTGCATAATAATGAAATTTGTTTACCTGCCGCCAAGTCGAGCCACATCCCCATTATTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGAAAATGGTATGGATTCATTTGTATCAAAACCTGTGACTTTCCAAAAATTGAAAGAATGTATTAAACAGTACCTACAGTGA 2982 0.4115 MVCEMENDHIEDMDIEILHSMWPEDIETDVGKKFNIEKPGKDEDMLEEIIIMEESTIVDFKRLMELTNYTDKGSSQLSHLVKHLEYKQANAVRLLREELDNLSKQRREVELRKLEILEEHRFEEGAYGDKRTVSILDDIYDIWQDVPRRKCNVVVQNKIIEINAEYDTTVYWKQRALHLEKMLEESVQREQILAEKLQESIKNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELRYRFIYNHFPSLHEEDIIGKTDVEIFTGSGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKTGETLGINYMGMDVTDQVRKRERMMKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSRTKLDREQRQLLGVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKKLTLEGHVADDVPAEVIGDVLRIRQILTNLVSNAVKFTHEGKVGINLYVVPEPSFSKAEASLQKTSIDQSSIRGNGVEDKFLSTPQNSSNQNHASSDEDRSSVKSECLMNGGTEEQPRSTETTVWIRCDVYDTGIGIPEKALPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHSGSTFTFILPYKISTICDHSDEPSDTEDDDDAASDDTTEGFFQFQPATSGSLFSSYGSSRTQTLLPQKIGCATSHKFNGFSENSYSVSSNDVKSKEITSVEGVSSITDCPDISECACSSGHGPEIEDENVNTRNKSGNDSAHSSYHTEVDQGRATIATMSREQAHQSQERAEIVSQCVTGSSSEVAKPNLTPKILLVEDNKINVMVTQSMMKQLGHSMDVVNNGVEAVRAVQRQSYDLILMDVCMPVMNGLQATKLIRSFEETGNWDAAREVGIELNPPASCLHNNEICLPAAKSSHIPIIAMTANALSESAEECFENGMDSFVSKPVTFQKLKECIKQYLQ 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3199g00003 993 SMART HKATPase_4 481 664 IPR003594 -
Pral3199g00003 993 ProSiteProfiles Histidine kinase domain profile. 377 664 IPR005467 -
Pral3199g00003 993 MobiDBLite consensus disorder prediction 539 582 - -
Pral3199g00003 993 Coils Coil 92 119 - -
Pral3199g00003 993 Gene3D PAS domain 211 346 - -
Pral3199g00003 993 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 424 663 IPR036890 -
Pral3199g00003 993 CDD HisKA 369 431 IPR003661 GO:0000155|GO:0007165
Pral3199g00003 993 FunFam Histidine kinase 5 837 993 - -
Pral3199g00003 993 FunFam Histidine kinase 5 212 347 - -
Pral3199g00003 993 SMART HisKA_10 370 435 IPR003661 GO:0000155|GO:0007165
Pral3199g00003 993 Pfam Response regulator receiver domain 845 912 IPR001789 GO:0000160
Pral3199g00003 993 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 13 992 - -
Pral3199g00003 993 SMART REC_2 843 988 IPR001789 GO:0000160
Pral3199g00003 993 FunFam Putative histidine kinase 5 358 435 - -
Pral3199g00003 993 Pfam His Kinase A (phospho-acceptor) domain 372 435 IPR003661 GO:0000155|GO:0007165
Pral3199g00003 993 SUPERFAMILY CheY-like 843 993 IPR011006 -
Pral3199g00003 993 MobiDBLite consensus disorder prediction 539 559 - -
Pral3199g00003 993 ProSiteProfiles Response regulatory domain profile. 844 992 IPR001789 GO:0000160
Pral3199g00003 993 MobiDBLite consensus disorder prediction 774 798 - -
Pral3199g00003 993 CDD HATPase_EvgS-ArcB-TorS-like 486 661 - -
Pral3199g00003 993 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 481 663 IPR003594 -
Pral3199g00003 993 Gene3D - 358 435 - -
Pral3199g00003 993 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 435 IPR036097 GO:0000155|GO:0007165
Pral3199g00003 993 CDD REC_hyHK_CKI1_RcsC-like 845 988 - -
Pral3199g00003 993 Coils Coil 187 214 - -
Pral3199g00003 993 PRINTS Bacterial sensor protein C-terminal signature 648 661 IPR004358 GO:0016310|GO:0016772
Pral3199g00003 993 PRINTS Bacterial sensor protein C-terminal signature 589 603 IPR004358 GO:0016310|GO:0016772
Pral3199g00003 993 PRINTS Bacterial sensor protein C-terminal signature 624 642 IPR004358 GO:0016310|GO:0016772
Pral3199g00003 993 Gene3D - 838 993 - -
Pral3199g00003 993 Gene3D - 436 667 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3199g00003 Pral-Chr3199 26333 31314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3199g00003 1 993 Histidine Kinase Gene Family AT5G10720 58.717 0.0 1122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral3199g00003 HATPase_c 2.5e-28 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3199g00003 - - gmx:100796072 1399.03