Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3196g00001 ATGGAGGATGCTGAAGGAGTCCTCAGCTTCGATTTCGAAGGCGGCCTAGACAGTGCTCCCGCCAATCCAGCTGCGCCATCCGGGCCTTTGGCCCCGTCTGATTCTCCCGCCGTTGCTACCGCCGCAGCTAATGGTGCGCCTCCTGGGGCTGCCGATCCTATTGCGAGCAATATTCCCGGTCGCCGGAGTTTCCGGCAGACGGTTTGCCGGCACTGGCTTCGTGGACTCTGCATGAAGGGCGATGCCTGCGGCTTCTTACACCAATATGACAAAGCGCGGATGCCCGTTTGCCGGTTTTTCAGATTATACGGTGAGTGTCGGGAGCAGGACTGCGTGTATAAGCACACAAACGAAGATATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCAAATGGTTCTGATTGCCGGTATAGGCATGCAAAATTGCCTGGACCTCCCCCTCCTGTGGAAGAAGTGCTTCAAAAAATTCAGCATTTATATTCTTACAATTATGCCAATTCCAACAAATTTTTCCAACAAAGAGGGTCTGGCTATTCTCAGCACGCTGAGAAATCTCACTTTCCACAAGGTCCTAATTCTGCAAACCAAGCTGTCCCTGGAAAGCCGCTAGCAGCAGAATCAGGCAATGTCCAGCAGCAGCAGCAGCCAATACAACAGTCTCAGCAGCAGGGTAGCCAGAATCAAATACAAAATACTACTAATGGCCAACCCAATCAGACGAACAGAACAGCGACACCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGCTATCTGTTCAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAGGCTAAATTGAATGAAGCCTTTGACTTGGTGGAGAATGTGATATTGATTTTCTCTGTCAACAGAACTCGACATTTTCAGGGTTGTGCAAAAATGACATCCAGAATTGGGGGCTCGGCTACTGGGGGTAATTGGAAATATGCACATGGAACTGCACATTATGGACGTAACTTCTCAGTTAAATGGCTAAAGTTATGTGAATTGTCATTTCACAAGACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTAAAGATAAGCAGAGATTGCCAAGAACTGGAGCCTTCTATTGGTGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAACTTATGGCTGTCTCACTTGCGGCAGAGTCTAAGAGAGAGGAAGAGAAAGCAAAGGGAGTGAATCCAGAAAATGGAGGAGAAAATCCAGATATTGTTCCATTTGAGGACAATGAAGAGGAAGAAGAGGAGGAAAGCGATGAAGAGGAGGAGAGCTTTGGTCCAGGTGTTGGGCCAGCTGCTCAAGGTCGAGGTAGGGGCAGAGGTATGATGTGGCCTCCTCACATGCCTATGGGCCGTGGGGCCCGGCCTATTCCAGGAATGCAGGGTTTTCCTCCAGTAATGATGGGAGATGGATTATCCTATGGACCAGTTACTCCCGATGGATTTGGTATGCCAGATCTATTTGGTATGGGCCCTCGTGGTTTTGGTCCCTATGGTCCTAGGTTCTCTAATGATTTTGCAGGGCCCCCAGCAGCAATGATGTTTCGCGGGCGACCCTCACAACCTGGGATGTTTCCAGGTGGTGGGTTTGGGATGATGATGAATCCTTCACGTGCTCCCTTTATGGGTGGAATGGGGGCTGCAGGTGGAAATCCACCACGGGCAGGTAGACCAGGCGGTATGCCTCCAATGTTCATGCCACCCCCGCAACATCAGAACACCAACCGTCTTACTAGGAGAGATCAAAGAACTAATGATCGGAATGATAGATATGGTTCAGGGCCAGAGCAGGGAAAGGGTCCAGACATGATGGGTCAGGCAGGTGGACCCGATGATGACATGCAATATCAGCAAGGATTCAACGCATCCCAGGAGGATCAGTATGCTGTCGGAAACAACCTGAGAAATGAAGAGAGTGAAAGTGAGGATGAGGCACCTCGGAGATCCAGACACGGTGAAGGGAAAAAAAGAAAAGGCGAAGTCTAG 2055 0.4881 MEDAEGVLSFDFEGGLDSAPANPAAPSGPLAPSDSPAVATAAANGAPPGAADPIASNIPGRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGSDCRYRHAKLPGPPPPVEEVLQKIQHLYSYNYANSNKFFQQRGSGYSQHAEKSHFPQGPNSANQAVPGKPLAAESGNVQQQQQPIQQSQQQGSQNQIQNTTNGQPNQTNRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDLVENVILIFSVNRTRHFQGCAKMTSRIGGSATGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAVSLAAESKREEEKAKGVNPENGGENPDIVPFEDNEEEEEEESDEEEESFGPGVGPAAQGRGRGRGMMWPPHMPMGRGARPIPGMQGFPPVMMGDGLSYGPVTPDGFGMPDLFGMGPRGFGPYGPRFSNDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPSRAPFMGGMGAAGGNPPRAGRPGGMPPMFMPPPQHQNTNRLTRRDQRTNDRNDRYGSGPEQGKGPDMMGQAGGPDDDMQYQQGFNASQEDQYAVGNNLRNEESESEDEAPRRSRHGEGKKRKGEV 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3196g00001 684 MobiDBLite consensus disorder prediction 403 466 - -
Pral3196g00001 684 ProSiteProfiles YTH domain profile. 254 389 IPR007275 GO:0003723
Pral3196g00001 684 MobiDBLite consensus disorder prediction 403 417 - -
Pral3196g00001 684 SUPERFAMILY CCCH zinc finger 65 88 IPR036855 GO:0046872
Pral3196g00001 684 CDD YTH 255 389 IPR007275 GO:0003723
Pral3196g00001 684 Gene3D ph1033 like domains 232 392 - -
Pral3196g00001 684 Gene3D - 59 121 - -
Pral3196g00001 684 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 28 676 IPR045168 -
Pral3196g00001 684 MobiDBLite consensus disorder prediction 428 447 - -
Pral3196g00001 684 MobiDBLite consensus disorder prediction 639 658 - -
Pral3196g00001 684 MobiDBLite consensus disorder prediction 568 684 - -
Pral3196g00001 684 MobiDBLite consensus disorder prediction 176 249 - -
Pral3196g00001 684 SMART c3hfinal6 63 89 IPR000571 GO:0046872
Pral3196g00001 684 SMART c3hfinal6 119 143 IPR000571 GO:0046872
Pral3196g00001 684 SMART c3hfinal6 91 117 IPR000571 GO:0046872
Pral3196g00001 684 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 59 119 - -
Pral3196g00001 684 MobiDBLite consensus disorder prediction 208 249 - -
Pral3196g00001 684 Pfam YT521-B-like domain 254 388 IPR007275 GO:0003723
Pral3196g00001 684 MobiDBLite consensus disorder prediction 599 616 - -
Pral3196g00001 684 MobiDBLite consensus disorder prediction 176 198 - -
Pral3196g00001 684 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Pral3196g00001 684 MobiDBLite consensus disorder prediction 1 57 - -
Pral3196g00001 684 ProSiteProfiles Zinc finger C3H1-type profile. 63 90 IPR000571 GO:0046872
Pral3196g00001 684 MobiDBLite consensus disorder prediction 659 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3196g00001 Pral-Chr3196 23930 37878 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral3196g00001 YTH 5e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3196g00001 K14404 - gmx:100802826 1000.35