Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3188g00052 ATGAGCATGTTAGGCCTGCGAGACCTACTTCTCATAGCTCCAAATCCTTCTTCTCTTCACCACCAGCACCACCAGCAGCAGCAACAACAGCAACCACAACAGGACCATTCGAACCTTCATCCTCTTCCTTCTTCTGCTTCTCTCAGCGTCGGTCTCGGAATTTTCCCTCTCCTAACTGCCACTCCTTGCGTCCCCAATGACCTCCCTCATGATTCCGCCGATCACAATCATCAGAATACTGCCAACAACTCCAATTTCTGGAACCTCAAGATGTGTCCGGAAGTTGCGAACTCTGCTAAGAAAGGAGTGATCGATGTGGAAGGTGAAGAGAATGGGATTTTTGGGGGTGATTTTAGGGTCTGTCAGGATTGTGGGAATCGCGCCAAGAAAGATTGTGGGTATAGACGATGCAGGACTTGTTGTAAGGGACGTGGGTACGATTGCAGCACTCACATCAAGAGCACGTGGGTCCCCGCCGCTCGCCGCCGTGAACGCCAGATGACCGTTCTTGCTGCCGCAGGCGGAAGTGGTGGTGCTTCTGGGTCGCCTCCCGGTTCTAAGAGGCCTAGAGCGTTCGGGTCGTCGCAGAATGCTGCTACCACTTCTCATAGTTCTGCCTCCAACGCTACTACGCCAAGAAGCTTAGATACAAGCTCTCGTCACCAAGATGCTAGCTTCAAACAGTCTTTACCAGGTCATGTCCGTGCCCCTGCGGTTTTCAGGTGCCACAGGGTGTCGGCTATTGGTAATGGCGAAGATGAGTTTGCGTACATGGCCACAGTTCATATCAGTGGTCATGTTTTCAAGGGGTTTCTGTATGATCAAGGTGCTGATGGGAAGAGCCCAATCCCATATGTTTCGGAACTTCAACTGGGAAATTATAGCAGTGAAAAGAATAGGGAATGTTCTTCTCCAATTGGGGTTCCAACTAATAATGCCTACCCTGCTTCTGGCTGTTGA 960 0.5083 MSMLGLRDLLLIAPNPSSLHHQHHQQQQQQQPQQDHSNLHPLPSSASLSVGLGIFPLLTATPCVPNDLPHDSADHNHQNTANNSNFWNLKMCPEVANSAKKGVIDVEGEENGIFGGDFRVCQDCGNRAKKDCGYRRCRTCCKGRGYDCSTHIKSTWVPAARRRERQMTVLAAAGGSGGASGSPPGSKRPRAFGSSQNAATTSHSSASNATTPRSLDTSSRHQDASFKQSLPGHVRAPAVFRCHRVSAIGNGEDEFAYMATVHISGHVFKGFLYDQGADGKSPIPYVSELQLGNYSSEKNRECSSPIGVPTNNAYPASGC 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3188g00052 319 NCBIfam putative zinc finger domain, LRP1 type 120 162 IPR006510 -
Pral3188g00052 319 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 21 304 IPR007818 GO:0003700|GO:0006355
Pral3188g00052 319 MobiDBLite consensus disorder prediction 173 230 - -
Pral3188g00052 319 MobiDBLite consensus disorder prediction 18 43 - -
Pral3188g00052 319 Pfam Domain of unknown function (DUF702) 120 278 - -
Pral3188g00052 319 NCBIfam LRP1 C-terminal domain 230 276 IPR006511 -
Pral3188g00052 319 MobiDBLite consensus disorder prediction 189 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3188g00052 Pral-Chr3188 1014016 1017636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3188g00052 1 314 C2H2 Transcription Factor Family AT5G12330 41.284 7.58e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pral3188g00052 DUF702 2.3e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3188g00052 - - gmx:100806835 400.979