Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3185g00019 ATGGAGAAGCACAAGTGCAAGCTCTGCTTGAGAAACTTCTCTAATGGCAGAGCTTTGGGAGGTCACATGAGGTCTCATATGGTGAACCTTCCTGTTCCTCCAAAACTAGAGGAGCCACCACCACCACCATTAGTTCAGCTCAGCTTCGAGGCCGAGTCTGCTCCGTCTTCTTCGTCATCGTCATCCTCAGAAGAAGAAGAAGAAGAGGATGACAAAGCTCTCTGCTATGGCCTCAGAGAGAATCCTAAGAGAAGCTTTCGCCTTGTGGATCCTGACTTTTCCTTTCCCGTACAATCCGCCTCTGTAGTTCTTCAAGACAGAGAAAGCGAGACTGAATCATCCAAGAATCCAACTCGAACGAGATCCAAAAGGGCATGTAATAACCAGTTCCATCATCATCAGAAGAAGATGAAACCCAGTAATGATCATCATCATAATCATCACCATCCTCACAACAAGAATAATAAGACCGAGTCGTCCTGGGTCGAGCCTGAACCGGTGAGTTCGATTTCTGATGCGACCACCGAGGAAGATGTCGCATTTTGTCTTATGATGTTGTCCAGGGACAAATGGAAGAGACAAGAGGAAAAGTACGAAGAAGAAGAAGACGAAGAGCAAGAAGAGGAAGACGAAGAAGAAGAAGAGGAAGACGACGAGGAAGACGACGATGACGGAGAGAGATCTGTGGAAGATTCTGATGAATTCTACGAGGAGATGAAATCATCAAAGACGCGATCAGTTCGTGGAAAGTACAAATGTGAGACGTGCAATAAAGTGTTTCGATCATATCAAGCATTGGGAGGTCACAGAGCAAGTCACAAGAAAATCAAACCGGTCATATGTGAACCAGAAATTGAGCAGGGAAATGTCCCCATGGCGGCGGAGAAGAAAATCCATGAATGTCCAGTTTGTTTCAGAGTGTTCGCTTCAGGCCAAGCTCTTGGAGGCCACAAGAGAACGCACGTGACAGGTTCTGCAATTCGAATTCCACCAACCAAGTTCGGAGATAACAACAGTTTGATAGATCTTAACCTTCCTGCTCAAGTTGATGAAGATGAGATCAGCCAAATCGAAAATTCTGCAGTTTCAGATGCAGAATTCCTCAAACACAGCTCACAAATCATTGGAGCACAATTAGCTTGA 1143 0.4541 MEKHKCKLCLRNFSNGRALGGHMRSHMVNLPVPPKLEEPPPPPLVQLSFEAESAPSSSSSSSSEEEEEEDDKALCYGLRENPKRSFRLVDPDFSFPVQSASVVLQDRESETESSKNPTRTRSKRACNNQFHHHQKKMKPSNDHHHNHHHPHNKNNKTESSWVEPEPVSSISDATTEEDVAFCLMMLSRDKWKRQEEKYEEEEDEEQEEEDEEEEEEDDEEDDDDGERSVEDSDEFYEEMKSSKTRSVRGKYKCETCNKVFRSYQALGGHRASHKKIKPVICEPEIEQGNVPMAAEKKIHECPVCFRVFASGQALGGHKRTHVTGSAIRIPPTKFGDNNSLIDLNLPAQVDEDEISQIENSAVSDAEFLKHSSQIIGAQLA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3185g00019 380 SMART c2h2final6 299 321 IPR013087 -
Pral3185g00019 380 SMART c2h2final6 4 26 IPR013087 -
Pral3185g00019 380 SMART c2h2final6 251 273 IPR013087 -
Pral3185g00019 380 Gene3D Classic Zinc Finger 248 321 - -
Pral3185g00019 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 278 IPR013087 -
Pral3185g00019 380 ProSitePatterns Zinc finger C2H2 type domain signature. 253 273 IPR013087 -
Pral3185g00019 380 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Pral3185g00019 380 MobiDBLite consensus disorder prediction 100 174 - -
Pral3185g00019 380 Pfam C2H2-type zinc finger 299 321 - -
Pral3185g00019 380 Pfam C2H2-type zinc finger 4 27 - -
Pral3185g00019 380 Pfam C2H2-type zinc finger 251 275 - -
Pral3185g00019 380 MobiDBLite consensus disorder prediction 193 241 - -
Pral3185g00019 380 SUPERFAMILY beta-beta-alpha zinc fingers 250 281 IPR036236 -
Pral3185g00019 380 MobiDBLite consensus disorder prediction 198 232 - -
Pral3185g00019 380 MobiDBLite consensus disorder prediction 159 174 - -
Pral3185g00019 380 MobiDBLite consensus disorder prediction 125 152 - -
Pral3185g00019 380 ProSitePatterns Zinc finger C2H2 type domain signature. 301 321 IPR013087 -
Pral3185g00019 380 SUPERFAMILY beta-beta-alpha zinc fingers 295 323 IPR036236 -
Pral3185g00019 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Pral3185g00019 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 299 326 IPR013087 -
Pral3185g00019 380 MobiDBLite consensus disorder prediction 30 77 - -
Pral3185g00019 380 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 371 IPR044303 GO:0006355
Pral3185g00019 380 Coils Coil 188 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3185g00019 Pral-Chr3185 685873 687932 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3185g00019 1 357 C2H2 Transcription Factor Family AT3G60580 40.909 4.72e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral3185g00019 zf-C2H2_6 8.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3185g00019 - - qsa:O6P43_017371 369.777