Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3185g00017 ATGGCTTTGACCGTAGATCAGCATCAATCATCAAACTTGAAGCATTTCTGTAAGATCTGCAAGAAAGGTTTTGGGTGTGGGAGAGCGCTCGGTGGACACATGAGAGCGCATGGCATCGGAGACGAGAGCTGGAACCTCGACGACGATGAGGATGCGGCGAGTGACTGGGAAGAAAAGCACAGCGGTGGCGGTGGCGGTGGCGGCAATGTGCCGCCGAGCACGAAGCGTATGTATGCTCTGAGAACAAACCCTAACAGATTAAAGAGTTGTAGGGCGTGTGAGAATTGCGGTATTGGAAAGTGTACTTCCGACCACTTAGAGTCGCAGGTTTCTTCCAGGATGTCCGATGACGGTGATGATGATGCTGATGGCGAGAGAGGTTGCGGATGGTCTAAACGGAAGAGATCATTCAGAGCCAAAGTTGGTACGTTGAATTCTCATTGTCCTTCAAGTGAAGATGAAGACCTGGCGGCCTGTCTCATGATGTTATCCAACGCCCCTGTTGATCCTCCCGCCGTCACGGCGGCCACCGCCGAGCCGGAGGAATCTAGTGCGTCGGCAAGCAGAGATGAGGAGAGAAGAAACCCATTAAACTTCATCACCCCACTATCTTATTGTGTTCCTGCCGTGGATCACAAAGCCAAAAGTGTGGTTCCAAAAGGCTTGTTCGAATGCAAAGCATGCAAGAAAATCTTCAATTCTCATCAAGCGTTAGGTGGCCATCGGGCCAGCCACAAAAAAGTTAAAGGCTGTTTCGCTTCAAGACTCGATCAATTCGAAGATAAAGACGACGATATCATAACTCATGAAGAGTTTCTTCCCACAAAATCAAACTCAATGGCTCAACATGATCATCCTTCCAACCTAATGGCGTCTTCGTCCAAAAGAAAATCCAAAGTTCATGAATGCTCTATATGTCACCGGACTTTCTCGTCAGGACAAGCCCTAGGAGGACACAAAAGGTGTCACTGGATCACACCAAACGCACCAGACTCGTCCACATTGGCTAGATTTCAACAGTTTCAAGACCATATGGAGCGAATGAATCAAATTCCCAAGTTTGATAACTCGGAGCCACTCGATCTAAAGCTTGACCTGAACCTTCCGGCTCCTCCGGCCGACGATCTGGCACGGCGGGACTTGGGGATGGAAATTTTCTTACAGCCATGGTTAGGAGGAACGACAAAGGAGAAGGATAAAAATACTGATGACAATAACAATAATAATACTAACAGTCAATGTCACAGCCCCAGCAACCGGGAATTACATCACCATGAAACTGAAAACGACAACGAAGAAGACAAAAATAATAACAATAACAGTGCTGTTTCGATCGAAAATGTTGAAGATGAAGCTGACAGTAAGCTGAAGTTAGCGAAACTAAGTGAGCTAAGGGACATGAACATAGGAGGGAGTTCTTCCCCATGGTTGCAGGTGGGGATTGGTTCAACCACTGGTGTGGGAGCGGAACAATAA 1476 0.4756 MALTVDQHQSSNLKHFCKICKKGFGCGRALGGHMRAHGIGDESWNLDDDEDAASDWEEKHSGGGGGGGNVPPSTKRMYALRTNPNRLKSCRACENCGIGKCTSDHLESQVSSRMSDDGDDDADGERGCGWSKRKRSFRAKVGTLNSHCPSSEDEDLAACLMMLSNAPVDPPAVTAATAEPEESSASASRDEERRNPLNFITPLSYCVPAVDHKAKSVVPKGLFECKACKKIFNSHQALGGHRASHKKVKGCFASRLDQFEDKDDDIITHEEFLPTKSNSMAQHDHPSNLMASSSKRKSKVHECSICHRTFSSGQALGGHKRCHWITPNAPDSSTLARFQQFQDHMERMNQIPKFDNSEPLDLKLDLNLPAPPADDLARRDLGMEIFLQPWLGGTTKEKDKNTDDNNNNNTNSQCHSPSNRELHHHETENDNEEDKNNNNNSAVSIENVEDEADSKLKLAKLSELRDMNIGGSSSPWLQVGIGSTTGVGAEQ 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3185g00017 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 250 IPR013087 -
Pral3185g00017 491 Pfam C2H2-type zinc finger 223 247 - -
Pral3185g00017 491 Pfam C2H2-type zinc finger 15 37 - -
Pral3185g00017 491 Pfam C2H2-type zinc finger 300 325 - -
Pral3185g00017 491 MobiDBLite consensus disorder prediction 392 451 - -
Pral3185g00017 491 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Pral3185g00017 491 SMART c2h2final6 301 323 IPR013087 -
Pral3185g00017 491 SMART c2h2final6 223 245 IPR013087 -
Pral3185g00017 491 SMART c2h2final6 15 37 IPR013087 -
Pral3185g00017 491 MobiDBLite consensus disorder prediction 170 194 - -
Pral3185g00017 491 PANTHER OS02G0659100 PROTEIN 6 485 - -
Pral3185g00017 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 301 323 IPR013087 -
Pral3185g00017 491 MobiDBLite consensus disorder prediction 418 435 - -
Pral3185g00017 491 MobiDBLite consensus disorder prediction 39 75 - -
Pral3185g00017 491 ProSitePatterns Zinc finger C2H2 type domain signature. 225 245 IPR013087 -
Pral3185g00017 491 MobiDBLite consensus disorder prediction 467 491 - -
Pral3185g00017 491 ProSitePatterns Zinc finger C2H2 type domain signature. 303 323 IPR013087 -
Pral3185g00017 491 SUPERFAMILY beta-beta-alpha zinc fingers 222 323 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3185g00017 Pral-Chr3185 640025 641500 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3185g00017 114 368 C2H2 Transcription Factor Family AT1G02040 37.308 2.88e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3185g00017 - - jre:109015950 568.54