Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3185g00013 ATGTCCAACCTTGCCACAAGTAAAGCAAGTCCAACACTTGCCTTGATGATTCCTTCCTCATTGCTCAACCCTAGAATGTTTCTCAATTCTTCACACCCCACAGCTGATTCAGAGTGGTCGTTAGCAGATGCTACGTGGTATGGAAGCCCCAACGGCGCTGGAAGTGATGGGGGTGCTTGTGGATATGGCAGTGATGTAGAAAAAGCTCCTTTTTCTTCGATGATAGCAGCTGGAGGCCCACCAATATATAACTCAGGCAATGGCTGTGGATCTTGTTATCAGGTGAAGTGCACATCTAATCCAGCATGTTCAGGTAGTCCAGTGGGCATAGTTATCAGTGATGAATGTCCAGGGTGTGGCTCTACTCACTTTGATTTGAGTGGCACAGCTTTTGGTGCTTTGGCTATTTCTGGCCAAGATGATCAGCTACGCAATGTTGGCAAGCTCCAGATTCAATATAAAAGAATTCAGTGTAATTATGGAGGAAAATCAATAAAATTTGAAGTGGACGCTGGATCGAACCAATACTATTTTGCTGTGTTGGTAGAATATGTGAACGGAGATGGTGATCTTTCACTTGCTGAACTGAAGCAAGCTAACTTTGCACAATGGCAAGCCATGCAATTAAGTTCAGGTGCAACGTGGAAGCTTAACTCTGCCACAGCTCTTCAAGCTCCGTTCTCCATTAGATTAACCACCTTCAAGTCAAAGAAGACACTTGAGGCCGTCAATGTGATTCAAGAAGGGTGGAGTCCAGGACAAATTTTTCAATCTTCTGTGAATTTCTAA 789 0.4411 MSNLATSKASPTLALMIPSSLLNPRMFLNSSHPTADSEWSLADATWYGSPNGAGSDGGACGYGSDVEKAPFSSMIAAGGPPIYNSGNGCGSCYQVKCTSNPACSGSPVGIVISDECPGCGSTHFDLSGTAFGALAISGQDDQLRNVGKLQIQYKRIQCNYGGKSIKFEVDAGSNQYYFAVLVEYVNGDGDLSLAELKQANFAQWQAMQLSSGATWKLNSATALQAPFSIRLTTFKSKKTLEAVNVIQEGWSPGQIFQSSVNF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3185g00013 262 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Pral3185g00013 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Pral3185g00013 262 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Pral3185g00013 262 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Pral3185g00013 262 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Pral3185g00013 262 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Pral3185g00013 262 Gene3D - 26 159 IPR036908 -
Pral3185g00013 262 PRINTS Major pollen allergen Lol pI signature 167 182 IPR005795 GO:0005576|GO:0019953
Pral3185g00013 262 PRINTS Major pollen allergen Lol pI signature 97 107 IPR005795 GO:0005576|GO:0019953
Pral3185g00013 262 PRINTS Major pollen allergen Lol pI signature 213 230 IPR005795 GO:0005576|GO:0019953
Pral3185g00013 262 PRINTS Major pollen allergen Lol pI signature 77 88 IPR005795 GO:0005576|GO:0019953
Pral3185g00013 262 PRINTS Major pollen allergen Lol pI signature 135 150 IPR005795 GO:0005576|GO:0019953
Pral3185g00013 262 PRINTS Major pollen allergen Lol pI signature 183 198 IPR005795 GO:0005576|GO:0019953
Pral3185g00013 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 163 IPR007112 -
Pral3185g00013 262 PANTHER EXPANSIN-B3 22 262 - -
Pral3185g00013 262 Pfam Expansin C-terminal domain 165 246 IPR007117 -
Pral3185g00013 262 Pfam Lytic transglycolase 76 153 IPR009009 -
Pral3185g00013 262 SUPERFAMILY Barwin-like endoglucanases 29 162 IPR036908 -
Pral3185g00013 262 CDD DPBB_EXPB_N 39 158 - -
Pral3185g00013 262 Gene3D - 160 262 IPR036749 -
Pral3185g00013 262 SUPERFAMILY PHL pollen allergen 163 258 IPR036749 -
Pral3185g00013 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 258 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3185g00013 Pral-Chr3185 546775 557038 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3185g00013 22 262 Expansin Gene Family AT1G65680 59.426 3.51e-105 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3185g00013 - - qsu:112000116 323.939