Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3185g00010 ATGCCTTCGTTATTGAGTAGGAGGTTGACTTTGTTGTTGACTCTTGTGGCTTTCTTTTCATTCTTGCTCATAGCGAGCGCTTCTTCTTGCTCAATGCCTAGAAAGTTTCTTAACTCTTCATCTTACATTTCCGATTCCGATTGGTCTCCGGCAGATGCTACGTGGTACGGAAGTCCTATCGGGAATGGAAGTGAAGGTGGTGCTTGTGGATATGGCGATTCTGTCGGAAAACCTCCATTTTCTTCAATGATATCAGCGGGAGGCTCGCCTATATATAAATCAGGAAAAGGCTGTGGAGGGTGTTATGAGGTGAAGTGCTCGTCAAATCCAGCATGTTCAGGTAACCCAGTGATTGTTGTGATCACTGATGAGTGTCCTGGGTGTGGTTCTGATCAGAGATTTCACTTTGATATGAGTGGCACTGCTTTTGGTGCCATGGCTGTTTCTGGTAAAGAAGATCAACTACGCAATGCTGGCAAGTTGGAGATTCAATATAGAAGTGTTAAATGCAACTTCCCAGGGACTAATATAGAATTCAAAGTGGACTCCGGATCAAATCCCTATTATTTTGCTGTTGTGATACAATATGAGAATGGTAACGGCCTTGCCAACGTTGAACTGAAGGAAGGTGAGGGCTCAGCATCATGGCGCCCCATGGAACAATCCTGGGGTGCAGTCTGGAAGCTCAACTCTGGCTCACCGCTTCAGGCACCGTTCTCTGTCCGGCTAACCGCACCAGAGTCACCGGACTCTCAGAACACCGTCGAGGCAAGCAATGTGATACCGGCAGGGTGGAGTCCTGGTCAGACTTATCGATCTCTGGTGAACTTCAACTAA 837 0.4707 MPSLLSRRLTLLLTLVAFFSFLLIASASSCSMPRKFLNSSSYISDSDWSPADATWYGSPIGNGSEGGACGYGDSVGKPPFSSMISAGGSPIYKSGKGCGGCYEVKCSSNPACSGNPVIVVITDECPGCGSDQRFHFDMSGTAFGAMAVSGKEDQLRNAGKLEIQYRSVKCNFPGTNIEFKVDSGSNPYYFAVVIQYENGNGLANVELKEGEGSASWRPMEQSWGAVWKLNSGSPLQAPFSVRLTAPESPDSQNTVEASNVIPAGWSPGQTYRSLVNFN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3185g00010 278 Pfam Expansin C-terminal domain 177 262 IPR007117 -
Pral3185g00010 278 Gene3D - 172 278 IPR036749 -
Pral3185g00010 278 Gene3D - 35 171 IPR036908 -
Pral3185g00010 278 PRINTS Major pollen allergen Lol pI signature 225 242 IPR005795 GO:0005576|GO:0019953
Pral3185g00010 278 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Pral3185g00010 278 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Pral3185g00010 278 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Pral3185g00010 278 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Pral3185g00010 278 SUPERFAMILY Barwin-like endoglucanases 47 195 IPR036908 -
Pral3185g00010 278 PANTHER EXPANSIN-B3 23 277 - -
Pral3185g00010 278 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Pral3185g00010 278 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Pral3185g00010 278 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Pral3185g00010 278 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Pral3185g00010 278 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Pral3185g00010 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 175 IPR007112 -
Pral3185g00010 278 Pfam Lytic transglycolase 85 165 IPR009009 -
Pral3185g00010 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 273 IPR007117 -
Pral3185g00010 278 CDD DPBB_EXPB_N 48 170 - -
Pral3185g00010 278 SMART dpbb_1 84 165 IPR007112 -
Pral3185g00010 278 SUPERFAMILY PHL pollen allergen 174 273 IPR036749 -
Pral3185g00010 278 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3185g00010 Pral-Chr3185 474744 481595 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3185g00010 28 277 Expansin Gene Family AT1G65680 58.566 7.96e-105 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3185g00010 - - pcin:129295689 360.533