Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3185g00008 ATGAGCTTCTGCGTACCCACCTGGGATGTTGACAACAATATTCCCTCAGGCCCCAGAACTTCTCTTCCTTCTAACTCCAACTCCACCGTCCCCGATCTCATCCCCACGTTTGACTATGAAGTTGCAGAGCTTACATGGCAGAACGGGCAGATATGGATGAATGGGATGGGTCTGCCACGACCTCCGGCAAAACCCATCATCTCTGGTGCGGCGGCGAGTACAAGGTCCGATCCGTTGACCACCCATTCGAAGTATCGAGCTAGTGGAACCTTAGAGTCCATAGTCAATCAAGCTACTTGCTTCTCCCAGAACACCAAATCAGTGCCACAAAGTGTTGACGGAGACTGCGGCGGTGACGGAGACAAGTTAGTGCCGTGGTTTGAACACCAACGCGGCGGCGGCAGCCGCGCTGCTGTATCAAACACAAAGACTATGGATGCTTTGGTGCCTTGCTCGAATCGTACGGAAGAGCAGAGTACGGCGGTTGTAGATGAATCCATGGGTGGAGGAGGGATTGGCACACGCAGCGGAGTGGGTTGCTCGGCACAGGTGGGATCTTGTGGCCGTGGAGGAGGTGCTGCGAGAGTTCCGGCGGTGGCGCGTGTGCCTGTAGCCCGCCAGTGGGATCAAAGTGTAAGTGAGAGAGATAGCCATCACGTGACTCCTGACACGTGCGATATGGAAATGGATGTGGGTTATACTTCTGCTTCAATGGGTTCGCTGGAAAACACCAGCTCCATCCGGCCGTACACGAAGAAGACCGCCGTTGACGACCATGATTCTGTTTGCCACAGTACACAGAGAGAAGAAGATGAGGAGGACGACAGAAAAGAAAGAACGGTGAAATCTTCATCGTCCAACAAACGGCGTAGAGCTGCTGATGTGCACAACCAGTCTGAAAGAAAAAGGCGAGATAAGATAAACCAAAGGATGAAAACATTGCAGAAGCTGGTTCCAACTTCCAGCAAGACTGATAAAGCTTCAATGCTGGATGAGGTAATAGATTATGTGAAGCAACTTCAAGCACAAGTTCAAATGGTGAACAGAATGAGTCTATCTTCCATGATGCTGCCAATGACCCTGCAACAGCAACAACTTCAACTCATGTCCATGATGGCTCCAATGGGCATGGGAATGGGCATGGACATGAACACTATGGCTCGCCCTAACATCCCCACCGTCCCTCCCATTCTCCACCCTTCCGCCGCCGCCGGCTTCATGCCGATGCCCTCCTGGGACGGTTCTGCTGGTGGCAATCGGCTTCAAGGAGCAGTGCCTGACTTCTTGTCCTCGTTCCTAGCATGCCAGACACAACAGCCGATGACCACGGATGCATACAGTCGGATGGCTGCTATTTATCAGCAAATGCAGCAAGCTCCAGCATCAAGTTCCAAGAACTGA 1401 0.5239 MSFCVPTWDVDNNIPSGPRTSLPSNSNSTVPDLIPTFDYEVAELTWQNGQIWMNGMGLPRPPAKPIISGAAASTRSDPLTTHSKYRASGTLESIVNQATCFSQNTKSVPQSVDGDCGGDGDKLVPWFEHQRGGGSRAAVSNTKTMDALVPCSNRTEEQSTAVVDESMGGGGIGTRSGVGCSAQVGSCGRGGGAARVPAVARVPVARQWDQSVSERDSHHVTPDTCDMEMDVGYTSASMGSLENTSSIRPYTKKTAVDDHDSVCHSTQREEDEEDDRKERTVKSSSSNKRRRAADVHNQSERKRRDKINQRMKTLQKLVPTSSKTDKASMLDEVIDYVKQLQAQVQMVNRMSLSSMMLPMTLQQQQLQLMSMMAPMGMGMGMDMNTMARPNIPTVPPILHPSAAAGFMPMPSWDGSAGGNRLQGAVPDFLSSFLACQTQQPMTTDAYSRMAAIYQQMQQAPASSSKN 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3185g00008 466 Pfam Helix-loop-helix DNA-binding domain 296 341 IPR011598 GO:0046983
Pral3185g00008 466 MobiDBLite consensus disorder prediction 252 310 - -
Pral3185g00008 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 291 340 IPR011598 GO:0046983
Pral3185g00008 466 CDD bHLH_AtPIF_like 291 356 IPR047265 -
Pral3185g00008 466 Gene3D - 285 351 IPR036638 GO:0046983
Pral3185g00008 466 SMART finulus 297 346 IPR011598 GO:0046983
Pral3185g00008 466 Coils Coil 297 317 - -
Pral3185g00008 466 MobiDBLite consensus disorder prediction 237 251 - -
Pral3185g00008 466 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 41 465 IPR031066 -
Pral3185g00008 466 MobiDBLite consensus disorder prediction 237 310 - -
Pral3185g00008 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 359 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3185g00008 Pral-Chr3185 423677 427991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3185g00008 1 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 45.595 4.49e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3185g00008 HLH 7.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3185g00008 - - pop:7497350 417.927