Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3183g00013 ATGTTGGGATACGAATGGGGGAACCCTCCGTCGACGATAGTGCTCGCCGGCAACGAAGAAGCTGGTGTTACCACTGGTGCAGATTCCGACCAGACCCACCGGCAAATCTTCGACCACTACACTTCTCATTCCTTATTGCCGGAGCAGCTCCTTCATCACCAGCAGCCAGCAGGGCCCACACAACACACCACCGCCAGCTCCACCGCTGATTTCTCTCACTACCAGTTCAGCCCTCCTCAACCCCACCATCACCACCACCACCATAACATTCAGCACTCTTTCTTTGACCCACGCGCCTTCCCTGGCGCGTCCTCTTCTTCGTTCCCTCCGCCACAGCCTCCTCCTCCTCCTTCCATGCTCTCTCTTGATCCGCTTCAGACAGTCAACGCCGGCGCCCACTGTGGGCCTGGTGGGTTTATGGTTGTTCCCAAGTCCGAGGACTTGGGTCGGTCCAGTGACTTCTCGGCGTCGAGAATTGGGCTCAACCTTGGTGGCCGCACGTACTTCTCATCGTCGGAGGATGACTTCGTGAGCCGGCTGTACCGCCGGTCCAGGCCGGCCGAACCGGGCTCAATGATGATGGCGACGAACTCGCCTCGCTGCCAAGCCGAGGGCTGTAATGCCGATCTATCACACGCCAAGCACTACCACCGGCGTCACAAGGTGTGCGAGTTTCATTCCAAGGCGGCCACCGTCATCGCCGCTGGCTTGACACAGCGATTCTGCCAACAGTGTAGCAGGTTCCATCTTCTTTCTGAGTTTGACAACGGAAAACGAAGCTGCAGGAAGAGACTGGCAGATCATAATCGTCGCAGAAGAAAAACCCAGCAGCCAAATCAAGAAATCCTCAAAACCCAGATCGACGACTCACGAAATTCTACTTTTGAAAGTGTTGCAAGATCTCCTCCGGATTCTGGAGCTCAGGCGATGTCGTCGGTGACGGTGGCGGTGTCTCCACCGGACTATTTCCGGCAACAAACGGCGTATCAGAATCAGAGGACAAGTCCGTCGGCAACATCAAGCTCACTGTTCTTCTCAAGCGGGTAG 1047 0.5635 MLGYEWGNPPSTIVLAGNEEAGVTTGADSDQTHRQIFDHYTSHSLLPEQLLHHQQPAGPTQHTTASSTADFSHYQFSPPQPHHHHHHHNIQHSFFDPRAFPGASSSSFPPPQPPPPPSMLSLDPLQTVNAGAHCGPGGFMVVPKSEDLGRSSDFSASRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEPGSMMMATNSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPNQEILKTQIDDSRNSTFESVARSPPDSGAQAMSSVTVAVSPPDYFRQQTAYQNQRTSPSATSSSLFFSSG 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3183g00013 348 MobiDBLite consensus disorder prediction 287 348 - -
Pral3183g00013 348 Pfam SBP domain 201 274 IPR004333 GO:0003677
Pral3183g00013 348 Gene3D - 193 262 IPR036893 GO:0003677|GO:0005634
Pral3183g00013 348 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 182 340 IPR044817 GO:0003677
Pral3183g00013 348 ProSiteProfiles Zinc finger SBP-type profile. 198 275 IPR004333 GO:0003677
Pral3183g00013 348 MobiDBLite consensus disorder prediction 104 121 - -
Pral3183g00013 348 SUPERFAMILY SBT domain 199 278 IPR036893 GO:0003677|GO:0005634
Pral3183g00013 348 MobiDBLite consensus disorder prediction 53 124 - -
Pral3183g00013 348 MobiDBLite consensus disorder prediction 54 75 - -
Pral3183g00013 348 FunFam Squamosa promoter-binding-like protein 14 192 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3183g00013 Pral-Chr3183 177444 180466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3183g00013 1 248 SBP-box Gene Family AT1G02065 45.588 1.81e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral3183g00013 SBP 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3183g00013 - - gmx:100778566 410.223