Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3183g00008 ATGGGACTGGGCAAGACATTGCAAGCTATCTCCTTACTGAGCTATTTAAAAGAGTACCAGTTGTCCGTTGGACCATTTTTGGTTTTATGTCCTCTAAGTGTAACAGATGGTTGGGTTTCGGAGATAGTTAAATTTTCACCCAAACTAAAAGTAATTAAATATGTTGGAGGGAAAGAATATAGGTGCAGCCTACGCAGGAATATTCATGAATATGTAAAGGGACAGTTGACAACAGTCAATGTCTTGTTACCTTTCGACGTCCTATTAACAACTTATGATATAGCACTGATCGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATATAATGTTCTCAAAGACCACTATGTCATGCCAAGACGGTTGTTGATGACTGGTACTCCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGTATGCCTTCTGTCTTCGGTACACTAGACCAGTTCCTTTCCACATTCAAGGACATCAGCGATCCTACATCAGTTCAAAATGCAGTGCAGGTAAAGGAGCAACTTAAAATACTGAAAAGTATATTAGGAGCTTTTATGCTTCGACGGACCAAGTCAAAGCTTATAGAGAGTGGAACTCTCGTGCTACCATCTCTCACTGAGATAACTGTTATGGCACCCCTAGTTGGCCTGCAAAAAAAGGTCTACATGTCAATTTTGAGGAAGGAGCTTCCTAAGTTACTTGCCCTGTCTTCTGGAACTTCAAATCATCAGTCTCTGCAGAATATTGTGATACAGCTAAGGAAAGCATGTAGCCATCCTTATTTATTCCCAGGTATTGAGCCTGAGCCTTATGAAGAGGGTGAACATCTGGTTCAGGCCAGTGGTAAATTGTTGATCCTGGATCAGCTTCTTCAGAAGTTACATTATTCTGGACACCGTGTCCTTCTTTTTGCTCAAATGACCCAAACACTTGATATTTTGCAGGACTATCTGGAGTTACGAAAATATTCCTATGTGCGTCTTGATGGGTCAGTTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTGGCCCATCAGCTAATTCAGTTTTGAATTCTGAAGCAGACCAAAGTGGAGCCTTTGTCTTCCTGATCACTACAAGAGCTGGGGGGGTTGGCTTGAATCTAGTGGCTGCTGATACGGTCGTATTCTATGAGCAAGATTGGAATCCTCAAGTAGACAAGCAGGCATTGCAGCGAGCCCATCGGATTGGCCAGATGAACCATGTGTTGTGCATAAACCTTGTTACAGAAAGAACAGCGGAGGAGGTAATTATGCGGAGGGCAGAGAAGAAATTGCAGCTTAGCCTCAATGTTATAGGTGATAGTATGCAGGAACATGAAGATGAACAAAAATCTGGAGTTGGGACTGGGGATTTAAAGTCCATCATATTTGGCCTCCACATGTTTGATCCTAATGAAAATAATGATGGAGAGCTTAGGGACATGAATTTGTCAGAAATTAATGCTATGACTGACAAGGTGATTGCAATGCGTGATGTACATATATCTGACAAGGATGACAGAAAATTTGAGATCAACCCTAGAAATCTTATAGAATCATATGATTCTAAGGAAGGAGCTTCTACTTCTTTTAACTCTGATCCTAGTCTTGATGAGGCTTCTTATCTTTCCTGGGTTAAAAAATTTGAGGAACTGTCAAAACCAAGCACTGACTCAATCATGGAGATGAGGAATAGAGGAATCTCAGATGAGGAAAAGCATCTAAAACTTGAGGCTGCAAAGAAGAAAGCGGAAGAAAAGAAGCTGGCTAAGTGGGAAGCTCTTGGATACCATTCATTGAATGTGAATGACCCTGTCATCCCTCCGGATGGTGGTAATCTATCGGATGCTGGATCTGTTCATTTTGTGTATGGAGATTGTACAGATCCATTGAACGTTTGTCCATCTGAACCTGCCATAATATTCAGCTGTGTTGATACCTCTGGAAACTGGGGTCGTGGAGGAATGTTTAATGCACTGAACAAGCTGTCTTTGAGCATTGGTGATGCCTATGAACGGGCTTCTGCACATGGGGACTTGCATCTTGGGGATCTGCATCTTCTAAAGCTTGAAGATGACTGTGATGAACAAAATATGGGCAGAAGAACTCCCATTTGGGTTGCTTTAGCTGTGGTTCAGTCCTATAATCGGAGGCGTAAAGTTCCTCGGAGTGCGATCTCACTTCCCCACTTGGAAATTTGCTTATCAAAAGCAGCATTTTCAGCCAAGCAAAATTCTGCATCAATACACATGCCCCGGATAGGTTATCAAGGTGGATCAGATCGTTCTGAGTGGTACACCATCGAGCGTCTTCTGCGAAAATATGCTTCCATTTATGGCATCAGTATATATGTATACTATTATCGTCGACAATCTCAGTAA 2448 0.4171 MGLGKTLQAISLLSYLKEYQLSVGPFLVLCPLSVTDGWVSEIVKFSPKLKVIKYVGGKEYRCSLRRNIHEYVKGQLTTVNVLLPFDVLLTTYDIALIDQDFLSQIPWQYAIIDEAQRLKNPSSVLYNVLKDHYVMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDPTSVQNAVQVKEQLKILKSILGAFMLRRTKSKLIESGTLVLPSLTEITVMAPLVGLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTQTLDILQDYLELRKYSYVRLDGSVRAEERFAAIRSFSGPSANSVLNSEADQSGAFVFLITTRAGGVGLNLVAADTVVFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTERTAEEVIMRRAEKKLQLSLNVIGDSMQEHEDEQKSGVGTGDLKSIIFGLHMFDPNENNDGELRDMNLSEINAMTDKVIAMRDVHISDKDDRKFEINPRNLIESYDSKEGASTSFNSDPSLDEASYLSWVKKFEELSKPSTDSIMEMRNRGISDEEKHLKLEAAKKKAEEKKLAKWEALGYHSLNVNDPVIPPDGGNLSDAGSVHFVYGDCTDPLNVCPSEPAIIFSCVDTSGNWGRGGMFNALNKLSLSIGDAYERASAHGDLHLGDLHLLKLEDDCDEQNMGRRTPIWVALAVVQSYNRRRKVPRSAISLPHLEICLSKAAFSAKQNSASIHMPRIGYQGGSDRSEWYTIERLLRKYASIYGISIYVYYYRRQSQ 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3183g00008 815 SMART ultradead3 1 171 IPR014001 -
Pral3183g00008 815 SMART helicmild6 331 426 IPR001650 -
Pral3183g00008 815 SUPERFAMILY Macro domain-like 642 809 IPR043472 -
Pral3183g00008 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 208 IPR027417 -
Pral3183g00008 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 474 IPR027417 -
Pral3183g00008 815 Gene3D - 1 220 IPR038718 -
Pral3183g00008 815 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 1 552 IPR031053 GO:0003678|GO:0006281|GO:0006338
Pral3183g00008 815 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 305 469 IPR001650 -
Pral3183g00008 815 Gene3D Leucine Aminopeptidase, subunit E, domain 1 641 815 IPR043472 -
Pral3183g00008 815 Pfam SNF2-related domain 1 281 IPR000330 GO:0005524|GO:0140658
Pral3183g00008 815 CDD SF2_C_SNF 294 437 - -
Pral3183g00008 815 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 163 IPR014001 -
Pral3183g00008 815 FunFam Putative helicase CHR10 219 530 - -
Pral3183g00008 815 Gene3D - 221 529 IPR027417 -
Pral3183g00008 815 Pfam Helicase conserved C-terminal domain 302 426 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3183g00008 Pral-Chr3183 102685 121969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3183g00008 1 485 RAD5 or RAD16-like Gene Family AT1G02670 26.538 2.31e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral3183g00008 SNF2_N 5.5e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3183g00008 K20092 - gmx:100797182 1176.77