Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3183g00007 ATGAACTATCAACAGAGACTCCAAGTTGCGGCGAAAATCATACTTGAACATGACGCACGCGACGCCGACACGCCGCTTAACGTCGAAGAGCTTGGGATCAAGGCGACCCTTAAACCCCACCAGGCGGAGGGAGTTTCGTGGCTCATAAGAAGATATAAACTTGGCGTCAACGTTCTCCTCGGGGATGAGATGGGACTGGGCAAGACATTGCAAGCTATCTCCTTACTGAGCTATTTAAAAGAGTACCAGTTGTCCGTTGGACCATTTTTGGTTTTATGTCCTCTAAGTGTAACAGATGGTTGGGTTTCGGAGATAGTTAAATTTTCACCCAAACTAAAAGTAATTAAATATGTTGGAGGGAAAGAATATAGGTGCAGCCTACGCAGGAATATTCATGAATATGTAAAGGGACAGTTGACAACAGTCAATGTCTTGTTACCTTTCGACGTCCTATTAACAACTTATGATATAGCACTGATCGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATATAATGTTCTCAAAGACCACTATGTCATGCCAAGACGGTTGTTGATGACTGGTACTCCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGTATGCCTTCTGTCTTCGGTACACTAGACCAGTTCCTTTCCACATTCAAGGACATCAGCGATCCTACATCAGTTCAAAATGCAGTGCAGGTAAAGGAGCAACTTAAAATACTGAAAAGTATATTAGGAGCTTTTATGCTTCGACGGACCAAGTCAAAGCTTATAGAGAGTGGAACTCTCGTGCTACCATCTCTCACTGAGATAACTGTTATGGCACCCCTAGTTGGCCTGCAAAAAAAGGTCTACATGTCAATTTTGAGGAAGGAGCTTCCTAAGTTACTTGCCCTGTCTTCTGGAACTTCAAATCATCAGTCTCTGCAGAATATTGTGATACAGCTAAGGAAAGCATGTAGCCATCCTTATTTATTCCCAGGTATTGAGCCTGAGCCTTATGAAGAGGGTGAACATCTGGTTCAGGCCAGTGGTAAATTGTTGATCCTGGATCAGCTTCTTCAGAAGTTACATTATTCTGGACACCGTGTCCTTCTTTTTGCTCAAATGACCCAAACACTTGATATTTTGCAGGACTATCTGGAGTTACGAAAATATTCCTATGTGCGTCTTGATGGGTCAGTTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTGGCCCATCAGCTAATTCAGTTTTGAATTCTGAAGCAGACCAAAGTGGAGCCTTTGTCTTCCTGATCACTACAAGAGCTGGGGGGGTTGGCTTGAATCTAGTGGCTGCTGATACGGTCGTATTCTATGAGCAAGATTGGAATCCTCAAGTAGACAAGCAGGCATTGCAGCGAGCCCATCGGATTGGCCAGATGAACCATGTGTTGTGCATAAACCTTGTTACAGAAAGAACAGCGGAGGAGGTAATTATGCGGAGGGCAGAGAAGAAATTGCAGCTTAGCCTCAATGTTATAGGTGATAGTATGCAGGAACATGAAGATGAACAAAAATCTGGAGTTGGGACTGGGGATTTAAAGTCCATCATATTTGGCCTCCACATGTTTGATCCTAATGAAAATAATGATGGAGAGCTTAGGGACATGAATTTGTCAGAAATTAATGCTATGACTGACAAGGTGATTGCAATGCGTGATGTACATATATCTGACAAGGATGACAGAAAATTTGAGATCAACCCTAGAAATCTTATAGAATCATATGATTCTAAGGAAGGAGCTTCTACTTCTTTTAACTCTGATCCTAGTCTTGATGAGGCTTCTTATCTTTCCTGGGTTAAAAAATTTGAGGAACTGTCAAAACCAAGCACTGACTCAATCATGGAGATGAGGAATAGAGGAATCTCAGATGAGGAAAAGCATCTAAAACTTGAGGCTGCAAAGAAGAAAGCGGAAGAAAAGAAGCTGGCTAAGTGGGAAGCTCTTGGATACCATTCATTGAATGTGAATGACCCTGTCATCCCTCCGGATGGTGGTAATCTATCGGATGCTGGATCTGTTCATTTTGTGTATGGAGATTGTACAGATCCATTGAACGTTTGTCCATCTGAACCTGCCATAATATTCAGCTGTGTTGATACCTCTGGAAACTGGGGTCGTGGAGGAATGTTTAATGCACTGAACAAGCTGTCTTTGAGCATTGGTGATGCCTATGAACGGGCTTCTGCACATGGGGACTTGCATCTTGGGGATCTGCATCTTCTAAAGCTTGAAGATGACTGTGATGAACAAAATATGGGCAGAAGAACTCCCATTTGGGTTGCTTTAGCTGTGGTTCAGTCCTATAATCGGAGGCGTAAAGTTCCTCGGAGTGCGATCTCACTTCCCCACTTGGAAATTTGCTTATCAAAAGCAGCATTTTCAGCCAAGCAAAATTCTGCATCAATACACATGCCCCGGATAGGTTATCAAGGTGGATCAGATCGTTCTGAGTGGTACACCATCGAGCGTCTTCTGCGAAAATATGCTTCCATTTATGGCATCAGTATATATGTATACTATTATCGTCGACAATCTCAGTAA 2637 0.4247 MNYQQRLQVAAKIILEHDARDADTPLNVEELGIKATLKPHQAEGVSWLIRRYKLGVNVLLGDEMGLGKTLQAISLLSYLKEYQLSVGPFLVLCPLSVTDGWVSEIVKFSPKLKVIKYVGGKEYRCSLRRNIHEYVKGQLTTVNVLLPFDVLLTTYDIALIDQDFLSQIPWQYAIIDEAQRLKNPSSVLYNVLKDHYVMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDPTSVQNAVQVKEQLKILKSILGAFMLRRTKSKLIESGTLVLPSLTEITVMAPLVGLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTQTLDILQDYLELRKYSYVRLDGSVRAEERFAAIRSFSGPSANSVLNSEADQSGAFVFLITTRAGGVGLNLVAADTVVFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTERTAEEVIMRRAEKKLQLSLNVIGDSMQEHEDEQKSGVGTGDLKSIIFGLHMFDPNENNDGELRDMNLSEINAMTDKVIAMRDVHISDKDDRKFEINPRNLIESYDSKEGASTSFNSDPSLDEASYLSWVKKFEELSKPSTDSIMEMRNRGISDEEKHLKLEAAKKKAEEKKLAKWEALGYHSLNVNDPVIPPDGGNLSDAGSVHFVYGDCTDPLNVCPSEPAIIFSCVDTSGNWGRGGMFNALNKLSLSIGDAYERASAHGDLHLGDLHLLKLEDDCDEQNMGRRTPIWVALAVVQSYNRRRKVPRSAISLPHLEICLSKAAFSAKQNSASIHMPRIGYQGGSDRSEWYTIERLLRKYASIYGISIYVYYYRRQSQ 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3183g00007 878 Gene3D - 11 283 IPR038718 -
Pral3183g00007 878 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 16 615 IPR031053 GO:0003678|GO:0006281|GO:0006338
Pral3183g00007 878 Pfam Helicase conserved C-terminal domain 365 489 IPR001650 -
Pral3183g00007 878 Gene3D - 284 592 IPR027417 -
Pral3183g00007 878 CDD SF2_C_SNF 357 500 - -
Pral3183g00007 878 Pfam SNF2-related domain 53 344 IPR000330 GO:0005524|GO:0140658
Pral3183g00007 878 Gene3D Leucine Aminopeptidase, subunit E, domain 1 704 878 IPR043472 -
Pral3183g00007 878 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 226 IPR014001 -
Pral3183g00007 878 SUPERFAMILY Macro domain-like 705 872 IPR043472 -
Pral3183g00007 878 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 532 IPR001650 -
Pral3183g00007 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 537 IPR027417 -
Pral3183g00007 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 271 IPR027417 -
Pral3183g00007 878 SMART ultradead3 33 234 IPR014001 -
Pral3183g00007 878 FunFam Putative helicase CHR10 282 593 - -
Pral3183g00007 878 SMART helicmild6 394 489 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3183g00007 Pral-Chr3183 102685 122141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3183g00007 19 548 RAD5 or RAD16-like Gene Family AT1G02670 26.829 1.32e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral3183g00007 SNF2_N 4.9e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3183g00007 K20092 - gmx:100797182 1269.6