Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3183g00003 ATGGGGAGCATGGGTGAACCGGACAGAAAACGGCGTCACTTTAGCTCCTTGTCTCCTACAGCTGCAGGTGCTACGGCCAAGAAGCTACCCTTCTTGCCCATTTCTGAAGACAAAAAGCTTGATATTGCTGTTCTTCAGTTTCAAAATCAAAAGCTTACACAGAAATTGGAAACTCAGAAGTTAGAATATACTGCGCTTGAGAATAAATTTTTCCAACTAAAGGATAGACAACATTCATATGATTCCATGTTAATGGTGGTCAAGAAGTCTTGGGAACAGGTAATTGATGATTTGGTGTCATGTTCTGCTCAAACGGTCGAGTCTAGCAGCAGCAAATTGCATACAAATGTTACATCAGGGACAGGTGTTGGTAGTCGATCCACTGTTGAGGATGACCTTCTTAGTCGACTTGAGCAAACTGGTGCAACTGAAAGTTCCTCCTCATATAGTTGGTCCAACCAGATGGAAGAGCAGAGACAAGTTACTGTTGAAAAAGCTAAGAGCATTATGCAAAATATTGTGGCAGCTATAAACAAACTTTGGTCCCTGAAAGATGGATTGCATGCTGCAGTGTTAATAAAACTTCCAGGAGATGGTACGTGTGGGCAGAAGTCCTCCGTTGATCTAAATATGGAAATTAAAACCTTGAGATCTGCCTTCACTGAGCTTCATTTAAAGCACAAGTCGTTGGCTAGTGAGTTCCGAAGTCATCGAGATGTTGATGCCAAAAATAAAGTTGAGCTTAAAAGATTGAAAGGGGAACTAGCAAGCACCATTGCAGAGCTTGAAGAAAGTAATCACAAATTGGCAACTCTCAAGGCAGAGAGAGATGCAGCAAAAGGGGCAGTTTTTCCCATCTTAAATGTCGGAACTAAGCATGCTGCTAATGATAAGATCAGGGACAAGCAAAAGGACTTGCAAGAGATGGAATCTTCTTTAAAGGAGATATTGGACCAAGGATCCTCGAGGCTAATGGAACTGAAAAATCTTCATGAGGAAAGAATAAGAATATTACAGCAAATGTGTGATTTACAAAACACTCTGAAGAATTTGAAGTGTATTACTTCTTCCCATGCATTCCAACTGGCAAGAGATCAGATAGAACAATCAAAAGTAGAGGTTCTTGAGTATCAGACCTTATTCGAGAAACTACAGGTTGAGAAGGACAATCTTGCTTGGAGGGAGAGGGAGTGGTACATAAAGAGTGATTTGGTGGATGTTTTCCAGAGGTCTTTGTCAGTCGTTGAATCTAAAGTTGCTGATTTAGGGACTGAAATAAAGAGGAAAATTGAGGAGAGAAATGCGATAGAAAATAAATTGCAAGAGGTGGCAAGGGAACCGGGAAGGAAGCAAATTATTGCAGACTTCAAATCTCTACTCTCTTCATTTCCTGAGGAAATGGGATCTATGCAAAGTAAATTAAGCAAGTATAAAGAAGCAGCTTCAGACATTCATTCTCTGCGTGCAGATGTGCAGTCTCTCTCCAGTATTCTTGACAGGAAGGTAAAGCAATGTGATGTTTTATCTAATAAATCTGCTGATCAACTTGCTGAGACACGGAGGCTGCTTGCTGTGGTTGATGATTTGAGAGAAAGTGAGCTGGAGTTGAAGTTGATTCTGGACATGTATAGACGTGAATCCATTGATTCAAGGGATGTTGTGGAGGCACGGGATTCTGAATACAGAGCATGGGCCCATGTTCAAAGTTTGAAATCTTCTCTTGGTGAACACAACTTGGAGCTTCGAGTTAAGACAGCAAATGAAGCAGAGGCTAGATCTCAACAGAGGCTTGCTACTGCTGAAGCTGAGATAGTTGACTTGAGACAGAAATTAGACGCCTCAAAAAGGGAGAAGGGTAAACTCTCTGATGTCTTGAAATCAAAAAGTGGGGAAATTGAAGCCTACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGATATGCAAACCCAAAACCAACATTTGTTGCACCAAATTACTGAAAGAGATGACTACAATATCAAGCTTGTCCTAGAGGGTGTAAGGGCAAGACAAAAACAGGAATCTTTGATCATGGAGAAGCAGGCCATTGAACGGGAGATCCAGCAATCAAATGCATCTCTTAATTTTTTTGACATGAAAGCTGCTAGGATTGATGAGCAGTTAAAGTTGTGGTCAGATCAGTGTCAGAGACTTGAGGAGGATAAGGTTCAAAGTTCTGCCACATTGGAAAATACACAGAGGAGGTTGTTGGATGTCAGAAGATTATCTCAACAAGCCAGAGAAACTGTGGAGGAAGTGCAGTCTAAAGTTGGCATTAGTCGAGTGACTTGTATGGAGTTACAAGTAGACCTAGAGAGAGAAAGGTTTGCCAGGAAAAGATTAGAGGAGGAGCTGGAGGTTGCCAGGAGAAAGGTTTCTTACCTTCAGGCGCAGATTGAGGGCTCCTCTGTTGTTGAAAAGCTTCAGCAGGAACTAGGAGAATACAGGGAGATTGTCAAGTGCAGTGTCTGCCAAGACAGGACCAAAGAGGTTGTAATTACAAAATGCTATCACTTGGTCTGCAATCCATGTATCCAGAGAGTTGTTGAGAGTAAGCAACGCAAGTGTCCGCTATGTGCTGCTAGCTTTGGGCCTAATGATGTTAAGCCCATTTATCTGTAA 2646 0.4165 MGSMGEPDRKRRHFSSLSPTAAGATAKKLPFLPISEDKKLDIAVLQFQNQKLTQKLETQKLEYTALENKFFQLKDRQHSYDSMLMVVKKSWEQVIDDLVSCSAQTVESSSSKLHTNVTSGTGVGSRSTVEDDLLSRLEQTGATESSSSYSWSNQMEEQRQVTVEKAKSIMQNIVAAINKLWSLKDGLHAAVLIKLPGDGTCGQKSSVDLNMEIKTLRSAFTELHLKHKSLASEFRSHRDVDAKNKVELKRLKGELASTIAELEESNHKLATLKAERDAAKGAVFPILNVGTKHAANDKIRDKQKDLQEMESSLKEILDQGSSRLMELKNLHEERIRILQQMCDLQNTLKNLKCITSSHAFQLARDQIEQSKVEVLEYQTLFEKLQVEKDNLAWREREWYIKSDLVDVFQRSLSVVESKVADLGTEIKRKIEERNAIENKLQEVAREPGRKQIIADFKSLLSSFPEEMGSMQSKLSKYKEAASDIHSLRADVQSLSSILDRKVKQCDVLSNKSADQLAETRRLLAVVDDLRESELELKLILDMYRRESIDSRDVVEARDSEYRAWAHVQSLKSSLGEHNLELRVKTANEAEARSQQRLATAEAEIVDLRQKLDASKREKGKLSDVLKSKSGEIEAYLSEIETIGQAYDDMQTQNQHLLHQITERDDYNIKLVLEGVRARQKQESLIMEKQAIEREIQQSNASLNFFDMKAARIDEQLKLWSDQCQRLEEDKVQSSATLENTQRRLLDVRRLSQQARETVEEVQSKVGISRVTCMELQVDLERERFARKRLEEELEVARRKVSYLQAQIEGSSVVEKLQQELGEYREIVKCSVCQDRTKEVVITKCYHLVCNPCIQRVVESKQRKCPLCAASFGPNDVKPIYL 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3183g00003 881 SMART ring_2 829 867 IPR001841 -
Pral3183g00003 881 MobiDBLite consensus disorder prediction 1 15 - -
Pral3183g00003 881 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Pral3183g00003 881 Coils Coil 772 806 - -
Pral3183g00003 881 Coils Coil 583 617 - -
Pral3183g00003 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 881 IPR013083 -
Pral3183g00003 881 Coils Coil 709 757 - -
Pral3183g00003 881 ProSiteProfiles Zinc finger RING-type profile. 829 867 IPR001841 -
Pral3183g00003 881 ProSitePatterns Zinc finger RING-type signature. 844 853 IPR017907 -
Pral3183g00003 881 SUPERFAMILY RING/U-box 821 880 - -
Pral3183g00003 881 MobiDBLite consensus disorder prediction 1 21 - -
Pral3183g00003 881 CDD RING-HC_Bre1-like 822 879 - -
Pral3183g00003 881 Coils Coil 42 76 - -
Pral3183g00003 881 PANTHER RING FINGER PROTEIN-RELATED 1 881 IPR013956 GO:0004842|GO:0010390
Pral3183g00003 881 Coils Coil 419 446 - -
Pral3183g00003 881 Coils Coil 292 319 - -
Pral3183g00003 881 Coils Coil 245 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3183g00003 Pral-Chr3183 23274 44928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3183g00003 809 880 C3H Transcription Factor Family AT3G58030 32.895 5.36e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3183g00003 K10696 - gmx:100790744 1249.96