Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3179g00003 ATGGGCGGTGGCGGCAACATAAACTCAGTATTCTATGCTGATTCATACCATCCTATTCAAGCTGGCAGCATAGACGGAACAGATATTCTTCCTCACGATAATGCTGTTTATCGAGCTCTTCTTTGTTCCTCCACTGGCCTCTACGACCCATTTGGCGATCACAAGGCCGCAGGAGACCCATATTGCACTGTCTTCGTTGGCCGCCTCTCTCGCTTCACCACTGAAGAAACCCTTCACAAAGTTATGGGCAAGTACGGTCGGGTGAAAAACTTGCGCTTGGTCAGGGACATTGTGACTGGAGCCTCCCGTGGTTATGCATTTGTTGAATATGAAACTGAAAGTCAGATGCGGCATGCTTATGAGGATGCTCATCATTCTATTATTGATGATTGCGAAATCCTAGTTGATTTTAACAGACAGCAATTGATGCCTGGGTGGATTCCTAGAAGGTTAGGTGGCGGTCTTGGCGGTAAGAAGGAATCTGGACAACTTCGTTTTGGTGGAAGGGAAAGGCCATTTCGAGCTCCTCTGAGACCGATACCATACAAGCATTTGGAGAGACTTGGCATTCCACCTCCTCCTGAAGGAAGATTCATGTCACGCTTTCAGATGCCATCGCCTCCTAGAAGAGAAAGGACCAATCCAGACAAGGAAGAAGGCTCCCGCAGAATAAGTTGTAATGACAGGAGTGAAGGTGTTGACAGGCATTATAAGAGTAGTTCAATTCACCGAGACAACTATACTCATCGAAGGAGCCCTGTGGAAAGAAGAGAGGGAAGAGATGGGCATTACTATAGTAGTAGAAGTTATGCTGAGAAGGAGCGTCATTCCAGGAGATCTGCTGAAAGGCGGGAACACTCTCATAAAAGGAAAGATAGAGATGAACACCCTCAGAGGTGGCAGAAACATGGCCATTATTCCCACCGTGACGAGTAA 936 0.4712 MGGGGNINSVFYADSYHPIQAGSIDGTDILPHDNAVYRALLCSSTGLYDPFGDHKAAGDPYCTVFVGRLSRFTTEETLHKVMGKYGRVKNLRLVRDIVTGASRGYAFVEYETESQMRHAYEDAHHSIIDDCEILVDFNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPYKHLERLGIPPPPEGRFMSRFQMPSPPRRERTNPDKEEGSRRISCNDRSEGVDRHYKSSSIHRDNYTHRRSPVERREGRDGHYYSSRSYAEKERHSRRSAERREHSHKRKDRDEHPQRWQKHGHYSHRDE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3179g00003 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
Pral3179g00003 311 Gene3D - 49 169 IPR012677 -
Pral3179g00003 311 MobiDBLite consensus disorder prediction 210 311 - -
Pral3179g00003 311 SUPERFAMILY RNA-binding domain, RBD 50 168 IPR035979 GO:0003676
Pral3179g00003 311 MobiDBLite consensus disorder prediction 152 311 - -
Pral3179g00003 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Pral3179g00003 311 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 11 288 - -
Pral3179g00003 311 SMART rrm1_1 63 136 IPR000504 GO:0003723
Pral3179g00003 311 FunFam Small nuclear ribonucleoprotein U11/U12 subunit 35 49 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3179g00003 Pral-Chr3179 102385 110411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3179g00003 64 135 Eukaryotic Initiation Factors Gene Family AT2G23350 30.556 1.25e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3179g00003 K13155 - zju:107412914 416.772