Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3141g00001 ATGAGCGATCATCTAGTGCTATATGTCGATCGTCTGGTACGCCCTGTGAACGTTGATTCAGTGACGCTGCCGGCTAAGTTTCTGTCTGACCCGTCTCCGGCGAGCAAGTCCGCGGACATTGCGGGGCTCTCTGGCTCTGCTCCGCCGGCGGAGAGCGATGCCGCTGGGTCGGAGCATGACGAGGATGGTAATGAGGATAAGCCATTGATCCCTAATGCAGAGTGTCGCATTTGTCAGGAGGAAGACAGCATTAACAATTTAGAAATACCTTGCGCCTGCAGCGGCAGTCTGAAGTATGCTCATCGAAAGTGCGTCCAGCATTGGTGTAATGAGAAAGGAGGTACAATTTGTGAGATATGCTATAAGCCTTACCAACCTGGTTATATTGCCCCAACTTCTCACTCTAATGCTGAGGAAACTGCCATTGATATAGGTGGAGGCTGGACAATCTCTGGTGCGCCTCCGGACTTTCATGATCCTCAACTCTTGGCAATTGCAGAGGCTGAACGCCACTACTTGGAAGCTGAATATGATGAGTATGCTGCATCTAATGCTAGTGGAGCTGCCTTTTGCCGTTCAGCTGCTTTAATTTTAATGGCCCTTCTACTCCTGCGACATGCAGTTTCTGTCCCGGATGCTGATGCAGATGATGATCCATCAACTTTCTTCTCTATCTTCTTACTTCGTGCGGCTGGATTTCTTTTACCTTGTTATATTATGGCTTGGGCAATCAGCATCTTGCAACGTCGGAGGCAAAGACAACAGGAGGCAGCAGCAGTGGCAGCAACCCAAGTCGCTGTTGTTTTGCAATCTGGGCAGCGGAGGGGCCTGCAATTTGCCATAGCACCAGGACCACCGGTAAATGCACAGCTGGAACACATTGTTTAG 888 0.5011 MSDHLVLYVDRLVRPVNVDSVTLPAKFLSDPSPASKSADIAGLSGSAPPAESDAAGSEHDEDGNEDKPLIPNAECRICQEEDSINNLEIPCACSGSLKYAHRKCVQHWCNEKGGTICEICYKPYQPGYIAPTSHSNAEETAIDIGGGWTISGAPPDFHDPQLLAIAEAERHYLEAEYDEYAASNASGAAFCRSAALILMALLLLRHAVSVPDADADDDPSTFFSIFLLRAAGFLLPCYIMAWAISILQRRRQRQQEAAAVAATQVAVVLQSGQRRGLQFAIAPGPPVNAQLEHIV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3141g00001 295 SMART ringv_2 74 121 IPR011016 GO:0008270
Pral3141g00001 295 CDD RING_CH-C4HC3_MARCH 75 120 - -
Pral3141g00001 295 ProSiteProfiles Zinc finger RING-CH-type profile. 67 127 IPR011016 GO:0008270
Pral3141g00001 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 130 IPR013083 -
Pral3141g00001 295 MobiDBLite consensus disorder prediction 30 68 - -
Pral3141g00001 295 Pfam RING-variant domain 75 120 IPR011016 GO:0008270
Pral3141g00001 295 SUPERFAMILY RING/U-box 72 125 - -
Pral3141g00001 295 Pfam Protein of unknown function (DUF3675) 126 244 IPR022143 -
Pral3141g00001 295 MobiDBLite consensus disorder prediction 54 68 - -
Pral3141g00001 295 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 255 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3141g00001 Pral-Chr3141 668413 672869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3141g00001 64 150 C3H Transcription Factor Family AT2G37950 31.313 8.11e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3141g00001 - - gmx:100779674 387.497