Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral313g00007 ATGCGCAAAAAGAGGCGTTTACATCAATTGAAGCATCCATTTGATTCTTATCCATTTGAGGCAATTCTCCATGGGTCATGGCAAGCTTTGAGGTGCATAGCAATTGAAGGGGGAACAATGGTCTTACATTTTAAAGATAATAACCATGTGGTTAGGGAGAAAGCTCCCATTTCAGACATTCGGATAAGGTCTAGGAAAGCAACTGTATCGGATTGCTCCTGCTTTTTAAGACCTGGAATTGACATATGTGTACTTTCTTCCTTTCAACATGCTAATGGCTCAGATCAAAATAATCTTAATGCTGTGTGGGCTGATGCTAAAATAAGTTCTATACAGAGGAAGCCACATGAACCTGGGTGCTCATGTCGGTATTATGTAAACATTTATGTTAATCAAGGTTGTATTGGTTCTGAGGTAAGAACTCTGAGTAAGGAGATCAAAGAAGTGGGAATAGATCAAATTTCGGTACTCCAAAGGCTTGAGCATAGTCCTTGTGAAGATCAACACTATCGGTGGGATTCATCTGAGGACTGGCATGCAGTACCACAAACTAGATTGCTTTCAGGGAAATTTTTATCTGATATTTCGTGGTTAATTGTCTCATCAGTTTTGAAGAAGGTTTCATTTTGTGTGAGATCGGCAGGTAACAAGATTGTATATCAAATCATAGGGGGTGATGATAATAGCTCCATACTGGATGTTGTAAATTTCAGAGTAGACAACAGCATGTTAGTACCCATCGTTTCCCAAGTTATTTCATCTGACACCGATAAGGTTGACAATAGAGATGATTCCCACAAAGATAAAGCATTTCCATCTTATAGTCCTGATGGTTTGCGTCGTTCCAAACGCCGGAATGTTCAACCCGAGCGTTACCTTGGCTGTGACGTGACTCATGTGTTGGATGTTGGTTTTGTCAGAACAAGGCCATACAAGATGGACACTCGAAAAGATGATACTGAGGATGATGAATTGTCAATGCCACTGTCATCCCTGATTGGTTTGCAAAAATGTTCTGGAGTGAAGCACGATGACAGTGGACTAAAGTTTGATAACATGAAATCCTACAACAAGCTTAAAGTGTATAAAAGGAGGCCTAAATCTAAGGAAGTGAATTCAGGTGATGCTGATAAGAATGAAAGTCAATCTCAACTTGCCATTGTTCCTGTTCCTCAAGAATGTGATCCTATTAACATTGAGCATTTTGATTCCAATGCCAAGGTCTCAAAACATCACACACAAAGAAATGTTGAATTTCCTAACAAATATTATCACCTGATGGGTAGTCCTGAACCAAAGACGAATGATATGGATTTGTTAACTTTTGAATCCCATAATCATCCCTCGAAGATTCCAGACCTTGAAGATTGTGTTGAAGAGCGTGGTGATATTGCTTCCCGATGTCATTATAATCATGGCACCCCTAAACTGAAGAGGAAGAATTCATTGGGTTTTGATGATACGGATTTTGAAGGCAGGTGGGAAGGGATAAATTCCAATAAAGCTGCAGTTCAAGGGAGAAAATATTATTCAACAATTTCAAGCAGACAATCTGATGAAGAAAGAACTTATAAAGCTAGGTCCTTAAGTGCGGGTGCCTATAAGGAATTGATAGACTCATATTTAAAGAATATGAATGCAAAACCATCCAAAGCTGAGCCACCTATAACTGAGCAGTGGATGCAATTCAAGGAAACAAGTAACTTAGGACAAAAGAGCGAAACAAAGGCCCCCCAAATGGAGGACGAGGAAGAAACTGATGAACTGGATATGTTGTGGAGAGAAATGGAAGTTTCATTGGCATCAAGTTATGTTGAAGAAGACACGGAGGGTTCAAGCGCTGCAGTTTTTACTGAGACCATGGAAAAGCCTGATTCACTTTGTTGCCATGATTATAGAATGAATGAAGAAGTTGGAATTTACTGTCTCTTATGTGGCATTGTCAGTACTGAGATAAAAGATATTTTGCCACCCTTTTTGGAACGTTCGATGTGGCACTATGAGGAGAAGCAACACAGTGGAGAAGGTTCAGAACCAGAGCCAAAGGCTGACGAAAATGATGGTTTCCATCTTTTTTTTACTGATGCTTTGCCTGATCAACCTATAACTGGAGAAAATGATAATGTATGGGCATTAATTCCTGAACTCAGGTGGAAGTTGCACGTCCACCAAAAGAGAGCTTTTGAATTTCTTTGGAAAAATATAGCTGGGTCTATGGACCCCACACTTATGGAAGCAGCTTCCAAAAAAAGAGGTGGTTGCGTGATATCTCATTCTCCTGGTGCTGGAAAAACATTCCTTATTATTGCATTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGCGACCATTGGTTCTTGCTCCGAAGACAACACTTTACACATGGTATAAAGAATTTATTAAATGGAAAATTCCTATTCCAGTGTATCTAATTCATGGTCGTAGAACCTACCGAGCGTTCAAGCAGAATACTGTGGCCTTTAATGGTGGTCCTAAACCTACTGATGATGTCAAGCATATTTTGGATTGCCTGGAAAAGATCCAAAAGTGGCACACGCACCCAAGTGTTCTAGTCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTTCTCACAGAAAGTACATGGCTAAAGTATTAAGGGAAAGTCCTGGTATTCTTATATTGGACGAAGGGCACAATCCTAGAAGCACAAAATCAAGGTTGAGGAAAGTATTGATGAAAGTACAGACGGAATTGAGAATATTACTTTCAGGTACATTGTTCCAGAACAATTTCTGTGAATACTTCAACACTCTTTGCTTGGCTAGACCAAAGTTTGCTTTTGAAGTGTTGAAAAAACTGGACCCTAAATACAAGAGAAAAATGAAAGGAAGAGGAAAAGCACGCCATTTAATAGAGTCACGAGCTAGAAAATTCTTCTTGGATACTATTGCGAAAAAAGTTGACTCCAAAGATAAAAAAGAGCAAATGCAGGGTCTGAACATGTTGAGAAAGATGACCAGTGGTTTTATAGATGTTTATGAAAATGGGAATTCAGAGGATCTTCCTGGTTTACAAATCTATACATTGGTAATGAATACTACTGATATACAGCATGAGATATTGAGTAAACTCCAGAAGAAAATGTCTGCCTGCAGTGGATATCCTTTGGAGTTAGAGCTTTTGATAACCCTTGGATCGATACATCCTTGGTTAGTCAAAACAGCTGTATGTGCGGAGAAGTTTTTTTCTATAGATCAATTGATGGAGCTAGAGAAATGGAAGTATGATTTGAAAAAAGGATCAAAAGTGAAATTTGTTTTGAGCCTGGTCTATCGCGTGGTCAGGAATGAGAAGATTCTAATGTTTTGCCATAACATTGCACCTGTGAGGTTATTTGCTGAATTATTTGAGAAGTTCTTTGGATGGCATAGAGGTCGAGAAGTCTTAGTTCTGACTGGGGAGCTAGAGCTCTTTGAACGTGGAAGGATAATGGATAAGTTTGAGGATCCTAATGGAGCATCAAAGATACTTCTTGCTTCAATTTCATCTTGTGCTGAAGGCATTAGTTTGACAGCAGCCTCTCGGGTGATTTTGTTGGATTCGGAATGGAATCCATCCAAGACAAAACAGGCTGTTGCACGTGCTTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTACCAACTGCTGGCAACAGGCACATTGGAGGAAGATAAGTATAAAAGAACCACCTGGAAAGAGTGGGTTTCCAGCATGATTTTTAGTGAAGAATTTGTGCAGGACCCTTCCCGATGGCGAAAAGAAAAGATTGAAGATGATATACTGCGAGAAATGGTTGCGGAAGACCGCTCCAATTCATTCCGTATGATTATGAAGAATGAAAAGGCGTCCACAAACTAA 3900 0.3951 MRKKRRLHQLKHPFDSYPFEAILHGSWQALRCIAIEGGTMVLHFKDNNHVVREKAPISDIRIRSRKATVSDCSCFLRPGIDICVLSSFQHANGSDQNNLNAVWADAKISSIQRKPHEPGCSCRYYVNIYVNQGCIGSEVRTLSKEIKEVGIDQISVLQRLEHSPCEDQHYRWDSSEDWHAVPQTRLLSGKFLSDISWLIVSSVLKKVSFCVRSAGNKIVYQIIGGDDNSSILDVVNFRVDNSMLVPIVSQVISSDTDKVDNRDDSHKDKAFPSYSPDGLRRSKRRNVQPERYLGCDVTHVLDVGFVRTRPYKMDTRKDDTEDDELSMPLSSLIGLQKCSGVKHDDSGLKFDNMKSYNKLKVYKRRPKSKEVNSGDADKNESQSQLAIVPVPQECDPINIEHFDSNAKVSKHHTQRNVEFPNKYYHLMGSPEPKTNDMDLLTFESHNHPSKIPDLEDCVEERGDIASRCHYNHGTPKLKRKNSLGFDDTDFEGRWEGINSNKAAVQGRKYYSTISSRQSDEERTYKARSLSAGAYKELIDSYLKNMNAKPSKAEPPITEQWMQFKETSNLGQKSETKAPQMEDEEETDELDMLWREMEVSLASSYVEEDTEGSSAAVFTETMEKPDSLCCHDYRMNEEVGIYCLLCGIVSTEIKDILPPFLERSMWHYEEKQHSGEGSEPEPKADENDGFHLFFTDALPDQPITGENDNVWALIPELRWKLHVHQKRAFEFLWKNIAGSMDPTLMEAASKKRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRAFKQNTVAFNGGPKPTDDVKHILDCLEKIQKWHTHPSVLVMGYTSFLTLMREDSKFSHRKYMAKVLRESPGILILDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAFEVLKKLDPKYKRKMKGRGKARHLIESRARKFFLDTIAKKVDSKDKKEQMQGLNMLRKMTSGFIDVYENGNSEDLPGLQIYTLVMNTTDIQHEILSKLQKKMSACSGYPLELELLITLGSIHPWLVKTAVCAEKFFSIDQLMELEKWKYDLKKGSKVKFVLSLVYRVVRNEKILMFCHNIAPVRLFAELFEKFFGWHRGREVLVLTGELELFERGRIMDKFEDPNGASKILLASISSCAEGISLTAASRVILLDSEWNPSKTKQAVARAFRPGQQKMVYVYQLLATGTLEEDKYKRTTWKEWVSSMIFSEEFVQDPSRWRKEKIEDDILREMVAEDRSNSFRMIMKNEKASTN 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral313g00007 1299 Pfam SNF2-related domain 720 996 IPR000330 GO:0005524|GO:0140658
Pral313g00007 1299 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 51 1298 IPR044567 GO:0080188
Pral313g00007 1299 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 745 944 IPR014001 -
Pral313g00007 1299 CDD DEXHc_ATRX-like 720 959 - -
Pral313g00007 1299 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1105 1266 IPR001650 -
Pral313g00007 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1020 1278 IPR027417 -
Pral313g00007 1299 SMART helicmild6 1130 1219 IPR001650 -
Pral313g00007 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 696 946 IPR027417 -
Pral313g00007 1299 CDD SF2_C_SNF 1094 1230 - -
Pral313g00007 1299 SMART ultradead3 716 960 IPR014001 -
Pral313g00007 1299 Gene3D - 700 986 IPR038718 -
Pral313g00007 1299 MobiDBLite consensus disorder prediction 256 285 - -
Pral313g00007 1299 Gene3D - 1075 1292 IPR027417 -
Pral313g00007 1299 MobiDBLite consensus disorder prediction 361 384 - -
Pral313g00007 1299 Pfam Helicase conserved C-terminal domain 1102 1218 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral313g00007 Pral-Chr313 30038 37348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral313g00007 1145 1237 RAD5 or RAD16-like Gene Family AT5G05130 37.234 3.64e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral313g00007 SNF2_N 1.5e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral313g00007 K10875 - gmx:100811703 1742.24