LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3135g00003	ATGATCTTCCCCATAATAATCATGATCAGTTTCATCAGAACAAGTACTTCTCTAGCATCAGATTACGTTGGAGATGACTGCCATAACAAAACACCACAAGCTCTTACTGCTTCATACAAAGCCAATCTTAACCAGCTCCTCTCATGGCTCTCCATGGACTCCGCCACAAGCGAAGGCTACAACCAAACCACCATCGGCAACGCCACCAACGCCGCCATCTACGGCCTCTATGACTGCCGTGGTGACGACCCCGGATACCTCTGTCAGTTTTGTGTCTCAACTGCCACCAGAGAGCTTCTCCAACGCTGTCCCAATCAACCTTCAGCTGCGATATGGTACAGCTACTGCATCCTCCGATACTCGAACGAGAACTTCTTTGGGAAGGTGACAATGAGCCCGTTGTGGTCCATGGAAGGAGTGAATAAGAAGGAGTCCGATCCAACGGAGTGGAAGAAGGCGGAGAGTTACATAAGGAGTCTGATTCGACGAGCAACAGAAAAGACGAAGGAGTTAAATGCGTGGGGAGGGTTTGATTTGGGAGGTGGAAGAAGAAGGTACGCGTTGGTACAGTGTAGTAGAGATCTTGAGAACAAGAGTTGCAAGCAATGTTTGGAGGCTTTGATGAATAACATTACTCAATGTTGTGAGCAGAAACAAGGATGGCAAGTTGGGACGCCAAGCTGTATGATCAAATACAACGATTACATGTTTTATCAGTCATCCATTTCCGATCGCAATCCTACCACAGGCAATGATGGGGATGGCAAGTCCAAATCTTTGATCATAAGCGTAAGTTTATTAGCGGCTGTGGCAATACTAAGTTTTTCTGTCTACTTATGGCGAAGGAAGACCAGGAAAGATGAACGACCATTGGATGGCGCTCCTATATTTTATGACATCTCCCGAAGAGAGAGATCATTGAACTCAGACCTTCCCACAATCCCTTTACATGTGATTCAACAGAGCACTCATCACTTTTCCGAAAATTCTAAATTGGGAGAAGGTGGATTTGGAGCCGTTTACAAGGGAACATTACCGGATGGAAAGGAAATTGCTGTTAAAAGACTCTCACAAGCATCAAGTCAAGGCTCAAAGGAGTTCAAAAATGAAGTGATATTCATAGCAAAATTGCAACATAGAAACCTTGTCAAACTCTTGGGATGCTGCATGGAGAAAAACGAGAAGCTACTTGTATACGAGTACATGCCAAATTCCAGCCTTGACTTCCACCTTTTCAATGATGAAAATAGAAAGAAACTACATTGGAATCTAAGAATAAATATTATTAATGGGATTGCAAAAGGACTTTTGTATCTTCATGAAGACTCTCGACTTAGAGTAGTTCATAGAGATTTGAAGGCTAGCAATGTCCTTTTGGACAATGAGATGAATCCTAAAATATCAGATTTTGGATTGGCAAGGACTTTTGAAGGAGCTCGAAATGAAGGAAATACAAAACGAATAATGGGTACATATGGTTATATGGCTCCAGAATATGCTATGGAAGGATTATTTTCAGTAAAATCAGATGTTTTTAGTTTTGGTGTTCTTTTACTAGAAATCATATGTGGAAAAAAGATTTGCAGTTTCTATCTTGCAGAACATGGCCAAAGTCTCCTAATTTATACTTGGAATTTGTGGTGCAAAGATAAATGTTTAGAATTGATGGACCCAATGCTAGAAGATTCATATATAGCAACTGAAGTTTCAAAGTGCGTACACATTGGCTTGCTTTGTGTTCAAGAAGATCCAGACGATAGACCAACCATGTCTACTATTGCAGTCATGCTTGCAAGTGACACAATGACATTACCAACACCTACTCCTCCTGCATTTTCTAGAAGAAAGTCTCTGGAAGAGTCGTCAACTTCTAGAACTTTTAACGATGCTTCTGTTAATGCAATAACTGCTTCTCACATCACGCCTAGATGA	1932	0.4161	MIFPIIIMISFIRTSTSLASDYVGDDCHNKTPQALTASYKANLNQLLSWLSMDSATSEGYNQTTIGNATNAAIYGLYDCRGDDPGYLCQFCVSTATRELLQRCPNQPSAAIWYSYCILRYSNENFFGKVTMSPLWSMEGVNKKESDPTEWKKAESYIRSLIRRATEKTKELNAWGGFDLGGGRRRYALVQCSRDLENKSCKQCLEALMNNITQCCEQKQGWQVGTPSCMIKYNDYMFYQSSISDRNPTTGNDGDGKSKSLIISVSLLAAVAILSFSVYLWRRKTRKDERPLDGAPIFYDISRRERSLNSDLPTIPLHVIQQSTHHFSENSKLGEGGFGAVYKGTLPDGKEIAVKRLSQASSQGSKEFKNEVIFIAKLQHRNLVKLLGCCMEKNEKLLVYEYMPNSSLDFHLFNDENRKKLHWNLRINIINGIAKGLLYLHEDSRLRVVHRDLKASNVLLDNEMNPKISDFGLARTFEGARNEGNTKRIMGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIICGKKICSFYLAEHGQSLLIYTWNLWCKDKCLELMDPMLEDSYIATEVSKCVHIGLLCVQEDPDDRPTMSTIAVMLASDTMTLPTPTPPAFSRRKSLEESSTSRTFNDASVNAITASHITPR	643

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3135g00003	643	ProSitePatterns	Protein kinases ATP-binding region signature.	332	354	IPR017441	GO:0005524
	Pral3135g00003	643	Gene3D	Transferase(Phosphotransferase) domain 1	402	604	-	-
	Pral3135g00003	643	Pfam	Salt stress response/antifungal	151	235	IPR002902	-
	Pral3135g00003	643	Pfam	Salt stress response/antifungal	27	122	IPR002902	-
	Pral3135g00003	643	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	34	637	-	-
	Pral3135g00003	643	ProSiteProfiles	Protein kinase domain profile.	326	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3135g00003	643	SUPERFAMILY	Protein kinase-like (PK-like)	310	617	IPR011009	-
	Pral3135g00003	643	CDD	STKc_IRAK	332	597	-	-
	Pral3135g00003	643	ProSiteProfiles	Gnk2-homologous domain profile.	131	237	IPR002902	-
	Pral3135g00003	643	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	297	401	-	-
	Pral3135g00003	643	Gene3D	Phosphorylase Kinase; domain 1	298	401	-	-
	Pral3135g00003	643	FunFam	Cysteine-rich receptor-like protein kinase 28	23	124	-	-
	Pral3135g00003	643	Gene3D	-	140	237	IPR038408	-
	Pral3135g00003	643	Gene3D	-	20	125	IPR038408	-
	Pral3135g00003	643	SMART	serkin_6	326	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3135g00003	643	Pfam	Protein tyrosine and serine/threonine kinase	329	595	IPR001245	GO:0004672\|GO:0006468
	Pral3135g00003	643	ProSiteProfiles	Gnk2-homologous domain profile.	21	125	IPR002902	-
	Pral3135g00003	643	FunFam	Liguleless narrow1	402	605	-	-
	Pral3135g00003	643	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	447	459	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3135g00003	Pral-Chr3135	181787	190591	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3135g00003	6	640	Receptor kinase-like Gene Family	AT4G05200	39.939	7.44e-164	484

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral3135g00003		PK_Tyr_Ser-Thr	5e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3135g00003	-		-	gmx:100796972	775.778