Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3122g00005 ATGCCTGCTCTTTGCGCCGCTAGGGTTTTTCAGTTAACCAGAGAACTGGGTCACAAGTCCGACGGCGAGACGATTCAGTGGCTTCTTCAACAAGCCGAGCCCTCCATCGTCGCCGCCACTGGTAGCGGCACAATCCCGGCTTCCGATTTATCAAAAGCAGGGTCATCTGTTTCTGACCGGAGAAGCTCTGTTTCAAGTGGTTTGCATGCAAAGGTGGAATCTTTAGGGCCAAGCTGGGCGAAAGTTAATGGGAATTTGGGAAGAACAGGACCAGTCATTAATGGAGTTTTGGCAAGCTATAGCGGGAATCAGTTTCATGGAATAGCAGCAGCAGAGCAGCAAGATCCAGGTTTAGAACTGGGTTTGTCACAGGATGGTAATATTGGGGTCTTATCATCGGAAACCATGGCTCAGTTTTACCAGCAATTAGGTCAAAGTCGTGAAGTTGCAGGGTTGTTGGAACCTGCCCAGAAGGATCAAACTCAGAGATCAAAACAGTGA 501 0.489 MPALCAARVFQLTRELGHKSDGETIQWLLQQAEPSIVAATGSGTIPASDLSKAGSSVSDRRSSVSSGLHAKVESLGPSWAKVNGNLGRTGPVINGVLASYSGNQFHGIAAAEQQDPGLELGLSQDGNIGVLSSETMAQFYQQLGQSREVAGLLEPAQKDQTQRSKQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3122g00005 166 ProSiteProfiles TCP domain profile. 1 39 IPR017887 -
Pral3122g00005 166 Pfam TCP family transcription factor 1 81 IPR017887 -
Pral3122g00005 166 MobiDBLite consensus disorder prediction 47 69 - -
Pral3122g00005 166 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 71 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3122g00005 Pral-Chr3122 121363 121938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3122g00005 1 140 TCP Transcription Factor Family AT3G27010 43.316 3.45e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pral3122g00005 TCP 3.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3122g00005 - - pcin:129308950 227.254