Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3112g00001 ATGCTCCAACCTCGGAATCAGCCGTCGAATCAGACGATGAACATCAACAATCTCTGCAAAAAGATGAAGCATAAGCAAAACCCCATTCCATCGAGAAAGCTTCGCATAATCTGTGACGACCCTTACGCCACAGATTCGTCTTCCAGCGAAGACGAAGGAGAAGGACGTTTCGAAAGGCGGCCGAGAAAGATGAAGCGAATCGTTCGTGAGCTCACTCTTCCTCTTTCATCTGCCCTGTCTAAATCCACTGAAACCGAAAGCTCATTTCAGGAAAGCAACAATGGAGTCATCAAGTCCTCCTCCAAGTTCGCTGATGGTCAAACCCAGAACAAGAAGAGGGTTTTTACCAAAACCCCATCAACAAAAGCTCGTCTTCTTCAAGATTGAGGCGTTCGACAGAGAAAATGGGGTAAATGGGCTGCTGAAATTCGTGATCCATTTAAAGGTGTTCGTATCTGGCTTGGTACTTATAATACTGCACAGGAAGCTTCTCAAGCCTATGAAACGAAGAAGATGGAGTTCGAAGCAATGGCTAAAGCTCAAGCTCAGGCTCAATCGGAGAAGAGTCACATTATTTCTTCTTCTTCAGCTCACGTGGCTGCTTCTGTATCAGAAGATTCTGAGAGCGTTTTCTCTCAAACCTCACCTTCCTCTGTGCTTGAACTCGATACTTCAACTTCCAAATCCACTGAAGAAGCTAACGCCACCAATAATGGCAGTTCAAGCAAAGAAGAAAACGAAGCGCAAAAGGAAGAAAACCAACAGGAAGGACAAGCAGCAGCAGCAGCAGCAGCAGCAGCTACTGTACCTATGGAGTCTAATGATTTTGAGAATGAATTTGCAGGGCTCCCAATCCCAGATCTGAGCTTCCTGAACGATCTGCCAGTACAAGCACTACCAACAACATCATCCGCAGCAACAGCAGCAGATGTTTCAGACATAAACCTCGGATTCGATCTGGACTGTGTAATGTTCGGCGACTTTGGTCAGGGTTTGGATGACCCTCTTGGTTTGGACGACTTACAAATTTGTGGGTTTGATGAGGATGACATGAATGCCAGTGAGCTGCCTGATTTCAATTTTGAACTGTGTGCTGATGATTTTGCTGGTTGGACTGAGGAGCCCCTCAATATACCTTGCGTATAA 1146 0.4581 MLQPRNQPSNQTMNINNLCKKMKHKQNPIPSRKLRIICDDPYATDSSSSEDEGEGRFERRPRKMKRIVRELTLPLSSALSKSTETESSFQESNNGVIKSSSKFADGQTQNKKRVFTKTPSTKARLLQDSXGVRQRKWGKWAAEIRDPFKGVRIWLGTYNTAQEASQAYETKKMEFEAMAKAQAQAQSEKSHIISSSSAHVAASVSEDSESVFSQTSPSSVLELDTSTSKSTEEANATNNGSSSKEENEAQKEENQQEGQAAAAAAAAATVPMESNDFENEFAGLPIPDLSFLNDLPVQALPTTSSAATAADVSDINLGFDLDCVMFGDFGQGLDDPLGLDDLQICGFDEDDMNASELPDFNFELCADDFAGWTEEPLNIPCV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3112g00001 382 Gene3D AP2/ERF domain 130 183 IPR036955 GO:0003700|GO:0006355
Pral3112g00001 382 SUPERFAMILY DNA-binding domain 130 175 IPR016177 GO:0003677
Pral3112g00001 382 ProSiteProfiles AP2/ERF domain profile. 128 186 IPR001471 GO:0003700|GO:0006355
Pral3112g00001 382 MobiDBLite consensus disorder prediction 98 120 - -
Pral3112g00001 382 MobiDBLite consensus disorder prediction 1 61 - -
Pral3112g00001 382 MobiDBLite consensus disorder prediction 213 244 - -
Pral3112g00001 382 CDD AP2 131 168 IPR001471 GO:0003700|GO:0006355
Pral3112g00001 382 SMART rav1_2 131 190 IPR001471 GO:0003700|GO:0006355
Pral3112g00001 382 MobiDBLite consensus disorder prediction 213 281 - -
Pral3112g00001 382 Pfam AP2 domain 130 176 IPR001471 GO:0003700|GO:0006355
Pral3112g00001 382 MobiDBLite consensus disorder prediction 1 21 - -
Pral3112g00001 382 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 270 - -
Pral3112g00001 382 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Pral3112g00001 382 PRINTS Ethylene responsive element binding protein signature 151 167 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3112g00001 Pral-Chr3112 1296 2863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3112g00001 30 381 AP2-EREBP Transcription Factor Family AT1G68550 33.880 1.93e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral3112g00001 AP2 9.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3112g00001 - - pcin:129321238 463.766