Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral3108g00006 | ATGGATTTTGATGAATATGAGTACTTAGAGAAGACTGTTGAAAATCCTGAACTTCAGAGGAAGGAGAAAACCAATGGCAGTGATGGAACTGTAAAAGCTGATGAGAAGAGAGATCATAGTCGGAGTTCAAAGCATAAAGCTAGTGAGAAGCATGATGATGTTGATCGTCATTCCAAGAAATTAAAATCTGGGGATGATTCTCATGGTTATGACAATCACAAAGAAAGAGGGTCATCTCAGCGTCGTTCACCATCCAGAGATGGAGACAAAGAGAAAGATCGGCACAGAAGCATCCATGACAATAGGGATAGGATGAGAGATCAAGATAGAGACAAGGAAGAGAAGTATAGTAGAGTGAGAGACAAACACCGGGAACGTGAACATGACCGAGAAAGAAACCAAAGAGACAGGGGGAGTGAGAGCGAAAGAGAAAGGGAGAGGGATAACTCGCGGCGAAGCAGAAGTATGTCTGAAAGGCTTTGGAGTGATTTGGATGAAAGAGATAGAGACAGGAGTCGTGACAGAGACTATAGAGACAGAGAAAGAACCAGGGACAATGATTATAGAGAAAGAGAGAGGGGGAGAGAATCAAGGGAGCGGGATAAAGATAGCAGACGACATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGCTGATCCTGAACGGGATCAGAGGACTGTGTTTGCTTATCAGATTTCTCTGAAGGCAGATGAAAGAGATGTATATGAATTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCCTGATAATGGACCGCAATTCCCGTCGATCTAAGGGTGTTGGGTATATAGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGACAACCACTTCTTGGCCAACCAGTGATGGTGAAGCCATCAGAAGCGGAAAAGAATTTGGTTCAGTCTACTGCATCTGTATCCAGTGGATCCACAGGACTTATGGGCCCTTACACTGGGGGAGCCAGAAGGCTCTATGTTGGCAATTTGTATTTCAGCATTACTGAACCTGATCTTCGTAGGGTTTTTGAAGCATTCGGTCAGGTTGAGGCAGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCAAGAAATGCTCAGAGCTTAAATGGACAACTTGAAATCGGTGGCAGGACAATAAAGGTATCTACAGTTATTGATCAAACCGGAATGGAAGAAGTTGGAGGAAACACTGCTGATTTTGATGATGACGCTGGCGGCGGCTTGTCCCTAAATGCTTGTTCTCGGGCATTACTCATGCAGAAGTTGGATCGTAGTGGCACTGGACCAGGCATTACCGGTTCCCTAGGTAACTCTGTTGCCAACAACTCAGGCCTGAACCTACCAGCTACAGCACATATGGGAGATACGTCAGCGGGTTCTCTACTGGTTTCTCCAATTGCTTCAGTTCCTTCAGCAGCTGCGTTGCCTGGAGGAAGTCTACAAATCCCCACTGCTACTGCTCCAATGCCTACTATTGATACAATTGGCGCTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCAACGATGAGAAGGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGAAAGTTGAGACATGTATATGTCGACAAGAACACTGCTGGCTTTGTGTACTTACGATTTGAAAATACTCAAGCTGCTACAAATGCACAGCGATCTCTGCATGGGAGGTGGTTTGCTGGGAAGATGATCACTGCTAGCTTCATGGTGCCTCAGGTATATGAGGATAAATTCCAAGACAGCAGATAG | 1848 | 0.4497 | MDFDEYEYLEKTVENPELQRKEKTNGSDGTVKADEKRDHSRSSKHKASEKHDDVDRHSKKLKSGDDSHGYDNHKERGSSQRRSPSRDGDKEKDRHRSIHDNRDRMRDQDRDKEEKYSRVRDKHREREHDRERNQRDRGSESERERERDNSRRSRSMSERLWSDLDERDRDRSRDRDYRDRERTRDNDYRERERGRESRERDKDSRRHKEKKEEAAEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASVSSGSTGLMGPYTGGARRLYVGNLYFSITEPDLRRVFEAFGQVEAVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSTVIDQTGMEEVGGNTADFDDDAGGGLSLNACSRALLMQKLDRSGTGPGITGSLGNSVANNSGLNLPATAHMGDTSAGSLLVSPIASVPSAAALPGGSLQIPTATAPMPTIDTIGAPSECLLLKNMFDPNDEKEPDFDLDIKEDVEAECSKFGKLRHVYVDKNTAGFVYLRFENTQAATNAQRSLHGRWFAGKMITASFMVPQVYEDKFQDSR | 615 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral3108g00006 | 615 | SMART | rrm1_1 | 522 | 600 | IPR000504 | GO:0003723 | |
| Pral3108g00006 | 615 | SMART | rrm1_1 | 331 | 403 | IPR000504 | GO:0003723 | |
| Pral3108g00006 | 615 | SMART | rrm1_1 | 227 | 299 | IPR000504 | GO:0003723 | |
| Pral3108g00006 | 615 | SUPERFAMILY | RNA-binding domain, RBD | 330 | 604 | IPR035979 | GO:0003676 | |
| Pral3108g00006 | 615 | SUPERFAMILY | RNA-binding domain, RBD | 219 | 327 | IPR035979 | GO:0003676 | |
| Pral3108g00006 | 615 | CDD | RRM3_RBM39_like | 520 | 602 | - | - | |
| Pral3108g00006 | 615 | Gene3D | - | 158 | 312 | IPR012677 | - | |
| Pral3108g00006 | 615 | Gene3D | - | 318 | 410 | IPR012677 | - | |
| Pral3108g00006 | 615 | NCBIfam | splicing factor, CC1-like family | 118 | 613 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Pral3108g00006 | 615 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 236 | 295 | IPR000504 | GO:0003723 | |
| Pral3108g00006 | 615 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 545 | 597 | IPR000504 | GO:0003723 | |
| Pral3108g00006 | 615 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 332 | 401 | IPR000504 | GO:0003723 | |
| Pral3108g00006 | 615 | FunFam | Splicing factor, CC1-like protein | 516 | 615 | - | - | |
| Pral3108g00006 | 615 | Gene3D | - | 517 | 615 | IPR012677 | - | |
| Pral3108g00006 | 615 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 330 | 407 | IPR000504 | GO:0003723 | |
| Pral3108g00006 | 615 | FunFam | CC1-like, splicing factor | 325 | 433 | - | - | |
| Pral3108g00006 | 615 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 613 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Pral3108g00006 | 615 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 226 | 303 | IPR000504 | GO:0003723 | |
| Pral3108g00006 | 615 | MobiDBLite | consensus disorder prediction | 1 | 225 | - | - | |
| Pral3108g00006 | 615 | SMART | rrm2_1 | 331 | 403 | IPR003954 | GO:0003676 | |
| Pral3108g00006 | 615 | SMART | rrm2_1 | 522 | 600 | IPR003954 | GO:0003676 | |
| Pral3108g00006 | 615 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 422 | 539 | IPR029123 | - | |
| Pral3108g00006 | 615 | CDD | RRM1_RBM39_like | 227 | 299 | - | - | |
| Pral3108g00006 | 615 | FunFam | Splicing factor CC1-like | 158 | 311 | - | - | |
| Pral3108g00006 | 615 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 521 | 604 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral3108g00006 | Pral-Chr3108 | 35216 | 44322 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral3108g00006 | 227 | 393 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 29.586 | 7.77e-14 | 72.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral3108g00006 | K13091 | - | qsa:O6P43_011435 | 749.584 |