Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3108g00004 ATGGATTTTGATGAATATGAGTACTTAGAGAAGACTGTTGAAAATCCTGAACTTCAGAGGAAGGAGAAAACCAATGGCAGTGATGGAACTGTAAAAGCTGATGAGAAGAGAGATCATAGTCGGAGTTCAAAGCATAAAGCTAGTGAGAAGCATGATGATGTTGATCGTCATTCCAAGAAATTAAAATCTGGGGATGATTCTCATGGTTATGACAATCACAAAGAAAGAGGGTCATCTCAGCGTCGTTCACCATCCAGAGATGGAGACAAAGAGAAAGATCGGCACAGAAGCATCCATGACAATAGGGATAGGATGAGAGATCAAGATAGAGACAAGGAAGAGAAGTATAGTAGAGTGAGAGACAAACACCGGGAACGTGAACATGACCGAGAAAGAAACCAAAGAGACAGGGGGAGTGAGAGCGAAAGAGAAAGGGAGAGGGATAACTCGCGGCGAAGCAGAAGTATGTCTGAAAGGCTTTGGAGTGATTTGGATGAAAGAGATAGAGACAGGAGTCGTGACAGAGACTATAGAGACAGAGAAAGAACCAGGGACAATGATTATAGAGAAAGAGAGAGGGGGAGAGAATCAAGGGAGCGGGATAAAGATAGCAGACGACATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGCTGATCCTGAACGGGATCAGAGGACTGTGTTTGCTTATCAGATTTCTCTGAAGGCAGATGAAAGAGATGTATATGAATTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCCTGATAATGGACCGCAATTCCCGTCGATCTAAGGGTGTTGGGTATATAGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGACAACCACTTCTTGGCCAACCAGTGATGGTGAAGCCATCAGAAGCGGAAAAGAATTTGGTTCAGTCTACTGCATCTGTATCCAGTGGATCCACAGGACTTATGGGCCCTTACACTGGGGGAGCCAGAAGGCTCTATGTTGGCAATTTGTATTTCAGCATTACTGAACCTGATCTTCGTAGGGTTTTTGAAGCATTCGGTCAGGTTGAGGCAGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCAAGAAATGCTCAGAGCTTAAATGGACAACTTGAAATCGGTGGCAGGACAATAAAGGTATCTACAGTTATTGATCAAACCGGAATGGAAGAAGTTGGAGGAAACACTGCTGATTTTGATGATGACGCTGGCGGCGGCTTGTCCCTAAATGCTTGTTCTCGGGCATTACTCATGCAGAAGTTGGATCGTAGTGGCACTGGACCAGGCATTACCGGTTCCCTAGGTAACTCTGTTGCCAACAACTCAGGCCTGAACCTACCAGCTACAGCACATATGGGAGATACGTCAGCGGGTTCTCTACTGGTTTCTCCAATTGCTTCAGTTCCTTCAGCAGCTGCGTTGCCTGGAGGAAGTCTACAAATCCCCACTGCTACTGCTCCAATGCCTACTATTGATACAATTGGCGCTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCAACGATGAGGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGAAAGTTGAGACATGTATATGTCGACAAGAACACTGCTGGCTTTGTGTACTTACGATTTGAAAATACTCAAGCTGCTACAAATGCACAGCGATCTCTGCATGGGAGGTGGTTTGCTGGGAAGATGATCACTGCTAGCTTCATGGTGCCTCAGGTATATGAGGATAAATTCCAAGACAGCAGATAG 1845 0.4499 MDFDEYEYLEKTVENPELQRKEKTNGSDGTVKADEKRDHSRSSKHKASEKHDDVDRHSKKLKSGDDSHGYDNHKERGSSQRRSPSRDGDKEKDRHRSIHDNRDRMRDQDRDKEEKYSRVRDKHREREHDRERNQRDRGSESERERERDNSRRSRSMSERLWSDLDERDRDRSRDRDYRDRERTRDNDYRERERGRESRERDKDSRRHKEKKEEAAEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASVSSGSTGLMGPYTGGARRLYVGNLYFSITEPDLRRVFEAFGQVEAVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSTVIDQTGMEEVGGNTADFDDDAGGGLSLNACSRALLMQKLDRSGTGPGITGSLGNSVANNSGLNLPATAHMGDTSAGSLLVSPIASVPSAAALPGGSLQIPTATAPMPTIDTIGAPSECLLLKNMFDPNDEEPDFDLDIKEDVEAECSKFGKLRHVYVDKNTAGFVYLRFENTQAATNAQRSLHGRWFAGKMITASFMVPQVYEDKFQDSR 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3108g00004 614 SUPERFAMILY RNA-binding domain, RBD 219 327 IPR035979 GO:0003676
Pral3108g00004 614 FunFam HIV Tat-specific factor 1 homolog 520 601 - -
Pral3108g00004 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 330 407 IPR000504 GO:0003723
Pral3108g00004 614 SMART rrm2_1 522 599 IPR003954 GO:0003676
Pral3108g00004 614 SMART rrm2_1 331 403 IPR003954 GO:0003676
Pral3108g00004 614 Gene3D - 158 312 IPR012677 -
Pral3108g00004 614 Gene3D - 318 410 IPR012677 -
Pral3108g00004 614 FunFam CC1-like, splicing factor 325 433 - -
Pral3108g00004 614 NCBIfam splicing factor, CC1-like family 118 612 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pral3108g00004 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 303 IPR000504 GO:0003723
Pral3108g00004 614 MobiDBLite consensus disorder prediction 1 225 - -
Pral3108g00004 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 295 IPR000504 GO:0003723
Pral3108g00004 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 332 401 IPR000504 GO:0003723
Pral3108g00004 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 544 596 IPR000504 GO:0003723
Pral3108g00004 614 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 422 535 IPR029123 -
Pral3108g00004 614 CDD RRM3_RBM39_like 520 601 - -
Pral3108g00004 614 FunFam Splicing factor CC1-like 158 311 - -
Pral3108g00004 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 521 603 IPR000504 GO:0003723
Pral3108g00004 614 SMART rrm1_1 522 599 IPR000504 GO:0003723
Pral3108g00004 614 SMART rrm1_1 331 403 IPR000504 GO:0003723
Pral3108g00004 614 SMART rrm1_1 227 299 IPR000504 GO:0003723
Pral3108g00004 614 SUPERFAMILY RNA-binding domain, RBD 330 603 IPR035979 GO:0003676
Pral3108g00004 614 CDD RRM1_RBM39_like 227 299 - -
Pral3108g00004 614 Gene3D - 517 614 IPR012677 -
Pral3108g00004 614 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 612 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3108g00004 Pral-Chr3108 35215 44322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3108g00004 227 393 Eukaryotic Initiation Factors Gene Family AT4G34110 29.586 8.45e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3108g00004 K13091 - gmx:100789839 745.347