Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3106g00002 ATGGCTGACCCTTACTCTCATCTTTTCTCTTCTCCCCCTTTCTTCCAATTCAACCCTTTCCCTTCTTCCAATCCTTCTTCTCACCACCATCCCTATGCTCTCCACAACTTCATCAACCACCCCACTGCCTCCTCCTCCGGCGGCTTTTTCCACCACCACCACGCCGCTTCTTATTCCTCTAATATCCCTTCGCCACCGTCTCCTCCTCTCAGAGAAGCTCTTCCTCTTCTGAGCCTCAGCCCGTCGACCAAGCAAGAGCAAGATGGTCATCATCATCAAGACTATTTGGATGCCAAGGCCGACGACAGGATCATTCTCCACAGTGCTAAACCCAAAGAGGAAGAAGAAGACGAAGAGGAGGACGATGAAGCCACTGTCACTGTTGCACTCCACATAGGGTTGCCCAGCCCTAGTGCTGCTGAGATGGCTTCTGTGCTCTCCTCCTGCAACGATAAAGAACAAGAAGGAGCAGGAGATGGCGGAGGAGGAGGAGGAGGAGGCGGCGGCGGCGGCGGAGATCATGAGGATTGTTGTTCTGGGTCTGGCTTCATGCTCCACAATAAGCTCAACAAGGGACAGTACTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCTACCCAGTTCTCTTGCCCTGTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCACTGAGAGGAACACAACCAACGGGCATGCTGAGGCTTCCATGCTATTGTTGCGCTCCAGGTTGCAGAAACAACATCGATCATCCAAGAGCGAAGCCACTGAAGGATTTTAGAACGCTTCAAACACATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGTAGAAAATGTGGGAAGGCTTTTGCTGTGAGAGGCGATTGGAGAACTCACGAGAAGAACTGTGGCAAGCTCTGGTATTGTATCTGCGGCTCTGATTTTAAGCACAAGAGGTCTCTTAAGGATCACATCAAAGCCTTTGGGGTTGGCCATGCTGCTTATGGAATCGATGGGTTTGAAGAAGAAGAAGACCCTGCGTCCGAAGTTGAGCAAGATAACGAGTCCACCCAGTAA 1113 0.5049 MADPYSHLFSSPPFFQFNPFPSSNPSSHHHPYALHNFINHPTASSSGGFFHHHHAASYSSNIPSPPSPPLREALPLLSLSPSTKQEQDGHHHQDYLDAKADDRIILHSAKPKEEEEDEEEDDEATVTVALHIGLPSPSAAEMASVLSSCNDKEQEGAGDGGGGGGGGGGGGGDHEDCCSGSGFMLHNKLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGVGHAAYGIDGFEEEEDPASEVEQDNESTQ 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3106g00002 370 ProSitePatterns Zinc finger C2H2 type domain signature. 211 231 IPR013087 -
Pral3106g00002 370 FunFam zinc finger protein WIP2-like 208 231 - -
Pral3106g00002 370 PANTHER ZINC FINGER PROTEIN WIP2 50 367 IPR043584 GO:0003700|GO:0010468
Pral3106g00002 370 Gene3D Classic Zinc Finger 208 231 - -
Pral3106g00002 370 Gene3D Classic Zinc Finger 271 345 - -
Pral3106g00002 370 FunFam Zinc finger protein WIP2 262 344 - -
Pral3106g00002 370 MobiDBLite consensus disorder prediction 141 171 - -
Pral3106g00002 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 293 313 IPR013087 -
Pral3106g00002 370 SMART c2h2final6 209 231 IPR013087 -
Pral3106g00002 370 SMART c2h2final6 293 313 IPR013087 -
Pral3106g00002 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 236 IPR013087 -
Pral3106g00002 370 SUPERFAMILY beta-beta-alpha zinc fingers 275 313 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3106g00002 Pral-Chr3106 18596 21162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3106g00002 1 370 C2H2 Transcription Factor Family AT3G57670 63.333 4.86e-150 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral3106g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3106g00002 - - qsa:O6P43_010164 493.041