Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3102g00005 ATGGGAGAAAATTGTGAAAGCTGTAGATCATGGGTAGACGACATTTACTGGACCCGTTTCCAATTCGTCCATTTTGCCCACTATCTTCCCAAGGGCTTTGATCGACAGCTTACACTGCCCAGAAGTTTTTCAGATAATTTGAGAAAGAAATTGCCAGATAATGTAACTCTGAGAGGTCCTGGTGGCGATGAGTGGAGTGTTGGATTGACAACCACAAATGATACCTTGCATTTCACGCACGGCTGGCAACAATTTGTTGAAGATCACTGTTTGGAAGAGAATGATCTCCTGGTCTTCAAGTACAATAACGAATCGCAGTTTGATGTTCTAATATTTGGCTGGGGTGGCTCCTGTGAGAAGGCTGCTTCTTATTTTGTTAGGAAATGTGGGCATACAAATAAGAGAATCAGAGGTAACCGTTTGAAAGAAGTCAATTTCCGCTCTAATATTCCCACTGAACATGCTTCGCCTGAGAAGTTTGTGCATGGTGAGAGCATGGGAGTGCCGGCTGTCATCCCTTCTGAAATTAGTAGCAAAGAGGCCCGTGATGCTGGTGTGGAATTTGCCTCCCCTGTGACAGCAATTCCAATGGCAGTTGCGGATGTCCAAACTAAGCAGAGGGGAGGAACCAGAGGATCTAAAACGCGCACGGACAGAGCTAACTTGATTGCTGATGCTGAACCCTCATCTGCGAGCAGAAGTAAGACGAATGAAATTTATATTTCAAACAGAAGACCTGTTACAGAAGATGAGAAGACGACTGCCCTCCAATTAGCTCAGGCAGCATGTACTGACCAGGGTTTCTACATAATCATGCGTCCCACACATGTATACAAGAGATTCTATGCGTCAATCCCTAGCAAGTGGTTAGCGGAACATCTTTTTCCTCACTCTGAAGACGTGATATTGCGCACGGGAGGGAATGAATGGCATGCCAAATACAGCTTTGAACATGGTCGTCGAACTGGAGGACTGACTGGTGGATGGAAACAGTTCGCTCTGGACAATAACCTGGAAGAATTTGATGTGTGTGTGTTTGAACTAGTTGGTCAAGGCAAGCCATTGATCATGGATGTGACAATATTCAGAGTTATTGAGGATTATTCTCCTCTGCAGAATGTGAGTTATGGAGGCAAACGGGGTCCGAATTGCATCCAATCATGGGAGTCGATCCTTAAATCTCGCGGATCATTGTATTTTTGA 1203 0.4489 MGENCESCRSWVDDIYWTRFQFVHFAHYLPKGFDRQLTLPRSFSDNLRKKLPDNVTLRGPGGDEWSVGLTTTNDTLHFTHGWQQFVEDHCLEENDLLVFKYNNESQFDVLIFGWGGSCEKAASYFVRKCGHTNKRIRGNRLKEVNFRSNIPTEHASPEKFVHGESMGVPAVIPSEISSKEARDAGVEFASPVTAIPMAVADVQTKQRGGTRGSKTRTDRANLIADAEPSSASRSKTNEIYISNRRPVTEDEKTTALQLAQAACTDQGFYIIMRPTHVYKRFYASIPSKWLAEHLFPHSEDVILRTGGNEWHAKYSFEHGRRTGGLTGGWKQFALDNNLEEFDVCVFELVGQGKPLIMDVTIFRVIEDYSPLQNVSYGGKRGPNCIQSWESILKSRGSLYF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3102g00005 400 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 31 366 IPR044837 -
Pral3102g00005 400 Pfam B3 DNA binding domain 35 109 IPR003340 GO:0003677
Pral3102g00005 400 Pfam B3 DNA binding domain 268 363 IPR003340 GO:0003677
Pral3102g00005 400 SUPERFAMILY DNA-binding pseudobarrel domain 268 356 IPR015300 -
Pral3102g00005 400 SUPERFAMILY DNA-binding pseudobarrel domain 21 114 IPR015300 -
Pral3102g00005 400 ProSiteProfiles B3 DNA-binding domain profile. 268 365 IPR003340 GO:0003677
Pral3102g00005 400 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Pral3102g00005 400 CDD B3_DNA 32 112 IPR003340 GO:0003677
Pral3102g00005 400 Gene3D - 19 115 IPR015300 -
Pral3102g00005 400 CDD B3_DNA 268 363 IPR003340 GO:0003677
Pral3102g00005 400 Gene3D - 246 368 IPR015300 -
Pral3102g00005 400 SMART B3_2 25 115 IPR003340 GO:0003677
Pral3102g00005 400 SMART B3_2 268 365 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3102g00005 Pral-Chr3102 25604 28915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3102g00005 1 363 REM Transcription Factor Family AT4G33280 34.465 4.83e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral3102g00005 B3 9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3102g00005 - - pcin:129301699 670.233