Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3102g00004 ATGGCTTGCCGGGACTGTGAGGCGAACCTAAATGTGAGGAGGCCTCACTTCTATGAGCTTTATTCCTCCACACCTTGCTCCGACAGACTGAGAATTCCTTCCGGTTTCAGCCATTGCTTTGAAGGTAGGACGTCTGGTTTAGTCTCATTGACGGGTCCTAGCGGAAATACTTGGCATGTTCAACTGGTTAAGGAGGGGAATGATCTATTCCTCCATCATGGATGGCAGACGTTTTTGGAAGATCATGTTATGGAAGTTGGTGACCTTTTGGTTTTCAGATATGAGGGTCACCTACACTTCAATGTGCTAGTCTTTGATCAAAGAGCATGCGAGAAAGAAGCAGCATTTATATCTAAGTGCAGCCAAAATTCATGTGACCTCAATCATATTAATGCACATAAAAGAAATAGGGAGGAGAATTATTCTTTGAATGTTGTTGCTGAAGGCGTGCCAAAGAAAATGAGAGGGAGTGCCTTTGAGAACCAGGAACTCAAGATGAGTATAGTTAGTAAAGATTTATCCTTGCTTGAGTGGGTAAAACCAATTAATATGTTCAGAGAAAAAGGAGAATCCTCCAAAGAAGATGCACAACTTAGATGCCCAGCTAGTGATGTTGCTTTGCCTTCTCGAATGGATGATAGCAACGAATGTGAAGAGGCTGCTATGCAGATTGGAAGTGGGAAAGAAGATGATCCTTGTATGAATAATAGAGTTTGTCTGTCAAAGTTATCGTCACATGATGAGAAAAGATTAGCTCAATTGTTTACTTCCTCTTTCCCGTATTTCGTGAGAATCATGAAAAGCTTCAACATCAGTGGTTCATATACTCTGAATATTCCGTATCAATTTTCAATGGTGCATCTTCCAAACTGCAAGATAAAGATCATCCTTCATAATATAAAAGGGGAGCGTTGGACTGTTAATTCTGTGCCAACAACAAGAGTACATACGAGTCACACTCTCTGTGGTGGATGGATGGCTTTTGTTCGTGACAATAACATTAAAGTTGGGGATATCTGCATTTTTGAACTTGTTCATGAGCGTGAATTACGAGTCCGCATTGTTGGAGCAGGAAAAGATGGGATAGACTGTCAGGGTGGGAAAGTAGCTTTTAGTAGGCCTCTTACAGGACATTCCATCAATTCCCATAGAACTTCTCGATGTATGCCGATCAAGGCCAAAGTCAATCCAAAATGCAATGGAAATGTTGATCTATCTGATAAAAAGTGGTCAAGGATGTGTCAGGATGCTGTTTTGTCTGTGGATAAAGAGAATCCTGGCGGAGTGTCGAAGGCTTCTAAGAAGACAGGGATTTGCCCTCAGTCAAAAGCTGCCCATAATAAGTTGGGTGTTCAGAGAAGACATCGAACTGAAGATGAACTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGCTGTTTGCACTTGATGAACAAAGAGCAGCTCAGGCCTTCACTTCCTCATTTCCTAGTTTTGTAAAAGTCATGAAAAAGTTCAATGTCAGCGGATCATACACTTTGAAAATCCCATATCAGTTTTCTGCAGCGCATCTTCCATCATACAAAACAGAAGTTGTGCTTCGTAATTTGAGAGGTGAATGTTGGGCTGTGAACTCTGTTCCAGACACAAAAGGCAGAGCAGTGCACACCTTTTGTGGGGGATGGATGGCCTTTGTCCGTGATAATGACATCAATTTTGGAGACACGTGCATTTTCGAACTTGTTGGTCAGTATGAAATGCAAGTTTATATTTCTGGGATTGGTAAGGAAGGGCTTGACCATCAGAACAGGGAACCAAAATCTAGTAGATTACCTGTAGTTCCAACGACCAGTAAACACTCATGCTTGTGA 1848 0.4177 MACRDCEANLNVRRPHFYELYSSTPCSDRLRIPSGFSHCFEGRTSGLVSLTGPSGNTWHVQLVKEGNDLFLHHGWQTFLEDHVMEVGDLLVFRYEGHLHFNVLVFDQRACEKEAAFISKCSQNSCDLNHINAHKRNREENYSLNVVAEGVPKKMRGSAFENQELKMSIVSKDLSLLEWVKPINMFREKGESSKEDAQLRCPASDVALPSRMDDSNECEEAAMQIGSGKEDDPCMNNRVCLSKLSSHDEKRLAQLFTSSFPYFVRIMKSFNISGSYTLNIPYQFSMVHLPNCKIKIILHNIKGERWTVNSVPTTRVHTSHTLCGGWMAFVRDNNIKVGDICIFELVHERELRVRIVGAGKDGIDCQGGKVAFSRPLTGHSINSHRTSRCMPIKAKVNPKCNGNVDLSDKKWSRMCQDAVLSVDKENPGGVSKASKKTGICPQSKAAHNKLGVQRRHRTEDELSSQAKAGLRMLFALDEQRAAQAFTSSFPSFVKVMKKFNVSGSYTLKIPYQFSAAHLPSYKTEVVLRNLRGECWAVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVGQYEMQVYISGIGKEGLDHQNREPKSSRLPVVPTTSKHSCL 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3102g00004 615 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Pral3102g00004 615 SUPERFAMILY DNA-binding pseudobarrel domain 484 585 IPR015300 -
Pral3102g00004 615 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 21 359 IPR044837 -
Pral3102g00004 615 ProSiteProfiles B3 DNA-binding domain profile. 262 358 IPR003340 GO:0003677
Pral3102g00004 615 Pfam B3 DNA binding domain 27 107 IPR003340 GO:0003677
Pral3102g00004 615 Pfam B3 DNA binding domain 266 354 IPR003340 GO:0003677
Pral3102g00004 615 Pfam B3 DNA binding domain 491 578 IPR003340 GO:0003677
Pral3102g00004 615 Gene3D - 243 357 IPR015300 -
Pral3102g00004 615 Gene3D - 476 586 IPR015300 -
Pral3102g00004 615 CDD B3_DNA 22 106 IPR003340 GO:0003677
Pral3102g00004 615 CDD B3_DNA 260 354 IPR003340 GO:0003677
Pral3102g00004 615 ProSiteProfiles B3 DNA-binding domain profile. 491 587 IPR003340 GO:0003677
Pral3102g00004 615 Gene3D - 9 110 IPR015300 -
Pral3102g00004 615 SMART B3_2 17 108 IPR003340 GO:0003677
Pral3102g00004 615 SMART B3_2 262 358 IPR003340 GO:0003677
Pral3102g00004 615 SMART B3_2 491 589 IPR003340 GO:0003677
Pral3102g00004 615 SUPERFAMILY DNA-binding pseudobarrel domain 255 356 IPR015300 -
Pral3102g00004 615 MobiDBLite consensus disorder prediction 592 615 - -
Pral3102g00004 615 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Pral3102g00004 615 MobiDBLite consensus disorder prediction 601 615 - -
Pral3102g00004 615 CDD B3_DNA 489 583 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3102g00004 Pral-Chr3102 20167 24327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3102g00004 14 356 B3 DNA Binding Superfamily AT3G18990 25.414 4.17e-22 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral3102g00004 B3 5.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3102g00004 - - pcin:129303869 1107.05