Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3100g00006 ATGGATCAGAAAACACTGGCTGAAGGGGAACAAAACGTTTTGAATTTTAAGTGTGCGAAGATCCTTCATGGAGCTGATAAATCTATCGCTTGTCAGACTCCAGAGAAGACTAGTGAGCCCTTACCCGCCAAACTCAAGGAAGGATCCACACAGCTTCCAGAAACATACAAGGCTTTAGAAGATTTGTTTGACTCTATGAGTTGTTCACTGAGGTTGCTTCGTCTGTGCAAAAAATCTACCACGTTTCAAAACATCTGTTCCCAGGTTGAAGTTCTTGCTAAAAGAAAATTCTTGTACAGGGATCTTGGGCAGATAAAGTATATACTTCCTGAAGCCATATGCATAGAGAAGGTATTAGTACATGATAATAGAAACTTGTGTATGAAGCCTGATTTGAAGATCACCTTGGTACATGAGGTTGTGCTAGGACAATCTAAAGAAACTACTTATGTGGCTCTCCGGCAACTTTTTGGTTTTAGGCTGCTTGAGTTCTTCAATACGCATCCAGAGAATACTGATATCCCAGAAGCTACTCTACCAGAACCTTTTCAACAAAGAAATAGCTTGATTTGTGAGGACTTGCCTGTAGATCCTTCTATACTCTCATCATCAACTTCGGATCAAAATCAACATCTATTACAGGAATGTCAGCCATATCCTTTAAAAAGGCATTTCTCAAAGAATAATGCTGTGTCAGAGACAGAAAATAACGTTGTAACAAGTCCAATTGGTCAGTCACATCATTCATCTGATTGCTTGGAAAATGAAGGAGGTGAAGGTGGCAGTGAATGGCAGAAAAAATGTACTACTTCATATTTGAAATCTGATAGCACAAATGATCAGGACATGGAAAAAGGACAGCAGAATGAATCATGTTCTATGGGATTCCAATGTAGTGTTGTTAATACACCAGCACGTCTGATTTGCTCTCCACAGTCTGTTAGTTGTGGTAGTTATGAAAGCTCTCATCTCAAGATTGCCTCATCCACAGATATGTTAACGACAGAGACACCTGCTCAGTCAACACCTAGAAGATTGGCACCCAGTTCTGATGTTAAACTTGAGATTATGACCACCCAGAATTCAATCTCATGCAATAAGCATGTAAAAAGAGTTCTTTTTTCACATGAAGGTGATTATGATGGTGACAAGTTAGAATCAAGTAGAGATGCTTGTGATAACATCCCTGAAGATGGACGAGCATGCACTGAGGATTTTAGTGTTTCTAATTTTGTTGTTCTATCTCAGAAGGTATGCCTTCTGACCCTACTCCTATTTTTTAATTCTTCAAGGCATGGTATACTTCCGGAAATCATTCATAATTCCATGCAATGA 1335 0.3918 MDQKTLAEGEQNVLNFKCAKILHGADKSIACQTPEKTSEPLPAKLKEGSTQLPETYKALEDLFDSMSCSLRLLRLCKKSTTFQNICSQVEVLAKRKFLYRDLGQIKYILPEAICIEKVLVHDNRNLCMKPDLKITLVHEVVLGQSKETTYVALRQLFGFRLLEFFNTHPENTDIPEATLPEPFQQRNSLICEDLPVDPSILSSSTSDQNQHLLQECQPYPLKRHFSKNNAVSETENNVVTSPIGQSHHSSDCLENEGGEGGSEWQKKCTTSYLKSDSTNDQDMEKGQQNESCSMGFQCSVVNTPARLICSPQSVSCGSYESSHLKIASSTDMLTTETPAQSTPRRLAPSSDVKLEIMTTQNSISCNKHVKRVLFSHEGDYDGDKLESSRDACDNIPEDGRACTEDFSVSNFVVLSQKVCLLTLLLFFNSSRHGILPEIIHNSMQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3100g00006 444 SMART CDT1_2 52 181 IPR014939 -
Pral3100g00006 444 SUPERFAMILY "Winged helix" DNA-binding domain 49 183 IPR036390 -
Pral3100g00006 444 Pfam DNA replication factor CDT1 like 52 116 IPR014939 -
Pral3100g00006 444 CDD Cdt1_m 33 182 IPR014939 -
Pral3100g00006 444 PANTHER DNA REPLICATION FACTOR CDT1 39 397 IPR045173 GO:0003677|GO:0030174|GO:0071163
Pral3100g00006 444 MobiDBLite consensus disorder prediction 240 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3100g00006 Pral-Chr3100 42436 45143 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3100g00006 30 188 Core DNA Replication Machinery Family AT3G54710 38.235 2.56e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3100g00006 K10727 - gmx:100794715 330.487