Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3095g00004 ATGGGGGGTTTGATCGATCTCAATACTACGGAGGACGATGAAACGCCGTCGTCTCTTTCCTCGGCGGCTTCGTCTTCGTCCTCTCACTCTGGTGTTGTAACTACTGCTTTGGCCCCTTCTTCTAACGCTGTGTGCTTGGAGCTATGGCACGCATGTGCGGGTCCAATGATCTCGTTGCCCAAGAAAGGAAGTGTTGTTGTGTACTTCCCACAGGGCCACTTGGAACAGCAGCTTCAGGATTTTGCGGTCGAGGCCTGTAATATCAATTTCCCATCTCATGTTTTCTGTCGCGTACTTGATGTTAAGCTCCATGCCGAGGAAGGGAGCGATGAAGTGTATTGCCACGTCTCGTTGGTTCCTGAGAATGAGCAAGTGGAACGAAAACTGCCAGAAGGAGAACTTGATGCTTATGTCGAAGAGGAGGATGCTGTTGCTGTGGTGAAGTCCACGACACCCCACATGTTCTGCAAGACTCTGACAGCTTCCGATACTAGCACTCATGGTGGGTTTTCTGTGCCTCGCCGAGCTGCTGAAGATTGCTTCCCTCCCCTGGATTACAACCAACAGAGACCTTCACAGGAGCTTGTGGCAAAGGATCTGCATGGCCTGGAATGGAGGTTCCGACATATTTACCGAGGTCAACCAAGGAGGCATTTGCTCACCACTGGATGGAGTGCATTTGTAAACAAGAAGAAGCTTGTATCTGGAGATGCTGTGTTGTTTCTTAGGGGCGAGGATGGAGAACTGAGATTGGGAATTCGTAGGGCTGCTCAATTGAAAAGTGGTGGTACTTTATCAGTTCCATCTGCTCATCAGTTGAATCCTAGCACTCTGATGGATGTGGTTAATGCTTTATCCACAAAATGTGCCTTTAACGTGTATTATAATCCCAGGGTTAGCTCATCAGGATTCATAATACCCCGTCACAAATTCTTGAAAAGCCTTGATCATTCATATTTGGTTGGAATGAGGTTCAGGATGCGTGTTGAAACTGATGAAACTACAGAGAGAAGGTGCACTGGATTAATTGTTGGAATGAGTGATGTGGATCCTATTAAATGGCCTGGATCAAAATGGAAATGCCTGGTGGTCAGGTGGGATGACATTGAAGCCCCTAGGCATAATAGGGTTTCCCCTTGGGAGATTGAGCCATCTAGTTCTGTTCCCACTTCCAATGCTTCCGTGGCAGCTAGTTTTAAGAGGAACAGGATTGGTCTGCCTTCAGAAAAGGCTGAATTACCAGTCCTGAATAGGATTGGAGGATCAGACTTTGGGGAATCATTGAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATATTGGGCGTTAATACCCCATATGTTGGTATCAGTGCCCAGAGTCACCAATTATCTGAAAGCAGGTGCTACCCTGGATCAAACTGTTCCAGAATTGTAGCAACAGGAAACAATGTCAGGGCCCCACAAGTGAGTTCTGACATTTCATGCCATGGCATAGGCTTTAGTGAATCCTCACGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATACAGAGCCTTGTCTGTCAATGAGGCTCATAGAACTGGCGGCTTTGGAATCTTTGATGGTTGTCAATTGCTGGGCTCCAGAAATCAATGGTCTACCCAGATGCTGGACAATTCTTCCCATATGCATCCATCTGGGCCAGTTTCATCCCCATCATCTGTTCTGATGTTCCAGCAAGCAGCCAATCCAGTTTCCAACCTTGATTATGGGAATAAAAGTAATCAAGAGATGGAAAGAAAAATGCACCACCGAGGTTCGTATGTTTCTGAAGTGAATGCTAGAAAATTAGCGCAATCCCCATCTTATGAGCCTGGTTCCTGTGGGCAAGTTCAGGAAGGAATGAATTCTTTTGCCACGTCGAATTTTCATAATCATCTGGTCACGGCAAGTTCAGATGATTCTATTTTGCCACTGACAGGTAGCCGAGAGTTGGCTTCTTCATGTAAAAGTAGCTGTAGACTCTTCGGTTTTTCATTAACCAAGGAAAATCATATTGCCCATGAAGAAGCACGCTCCTCTACAATCACCTGTCAATTAAATTCCGGACCTTCCTTTCTAAGACATGTTGGGGATGAACTTCAGCTAGGGCCTTCACTCAGGAACAAGGCGGCTGGAAGCAACTGTACCAAAGGAGTGCTTCGGTATTGA 2184 0.4643 MGGLIDLNTTEDDETPSSLSSAASSSSSHSGVVTTALAPSSNAVCLELWHACAGPMISLPKKGSVVVYFPQGHLEQQLQDFAVEACNINFPSHVFCRVLDVKLHAEEGSDEVYCHVSLVPENEQVERKLPEGELDAYVEEEDAVAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGGTLSVPSAHQLNPSTLMDVVNALSTKCAFNVYYNPRVSSSGFIIPRHKFLKSLDHSYLVGMRFRMRVETDETTERRCTGLIVGMSDVDPIKWPGSKWKCLVVRWDDIEAPRHNRVSPWEIEPSSSVPTSNASVAASFKRNRIGLPSEKAELPVLNRIGGSDFGESLRFQKVLQGQEILGVNTPYVGISAQSHQLSESRCYPGSNCSRIVATGNNVRAPQVSSDISCHGIGFSESSRFQKVLQGQEILPSQPYRALSVNEAHRTGGFGIFDGCQLLGSRNQWSTQMLDNSSHMHPSGPVSSPSSVLMFQQAANPVSNLDYGNKSNQEMERKMHHRGSYVSEVNARKLAQSPSYEPGSCGQVQEGMNSFATSNFHNHLVTASSDDSILPLTGSRELASSCKSSCRLFGFSLTKENHIAHEEARSSTITCQLNSGPSFLRHVGDELQLGPSLRNKAAGSNCTKGVLRY 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3095g00004 727 MobiDBLite consensus disorder prediction 10 27 - -
Pral3095g00004 727 FunFam Auxin response factor 153 257 - -
Pral3095g00004 727 MobiDBLite consensus disorder prediction 1 27 - -
Pral3095g00004 727 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677
Pral3095g00004 727 SUPERFAMILY DNA-binding pseudobarrel domain 147 262 IPR015300 -
Pral3095g00004 727 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 681 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral3095g00004 727 Gene3D - 319 392 - -
Pral3095g00004 727 FunFam Auxin response factor 318 389 - -
Pral3095g00004 727 CDD B3_DNA 153 255 IPR003340 GO:0003677
Pral3095g00004 727 Gene3D - 153 257 IPR015300 -
Pral3095g00004 727 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677
Pral3095g00004 727 SMART B3_2 155 257 IPR003340 GO:0003677
Pral3095g00004 727 Pfam Auxin response factor 282 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3095g00004 Pral-Chr3095 33135 41995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3095g00004 40 508 B3 DNA Binding Superfamily AT5G60450 50.617 7.38e-147 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral3095g00004 B3 2.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3095g00004 K14486 - gmx:100789906 977.237