Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3088g00006 ATGCCTAGACAGCAGTGTAGCCTTCCTTACACTAGAATTCTTGTCATTTTGCTACACGAGGAACTATGGGCTATGAAACTGGGTTTGAAGCTTCTGCAAGAAAGAGCAAAAGTGGGATCGTTTTGGTGGCCATATGTCAGCAATCTCCCTGAAACATACAGTGTGCCTATCTTCTTTCAAGGGGAGGATATAAAGAACTTGCAGTATGCTCCACTGCTTCACCAGGTAAACAAAAGATGTCGTTTTCTTCTTGATTTTGAGCAAGAGTGCAGGCGCACCCTTGACAATCTGAAACCAGATAAGCATCCTTTTGGTGGGCAAGAAGTAGATGCATCTGCACTTGGATGGGCAATGTCAGCAGTCTCATCTAGGGCATTCCGGTTATATGGTGACAAGCGTCCAGATGGGACTCACACAGACATACCAATGATGCTTCCTCTAATTGATATGTGCAACCATAGTTTTAATCCGAATGCCCGAATTGTTCAGGAAAAGGATACCAGTGCAACGAAGATGCAAGTAAAGGCTAACCCTATGCCTTTGCCTCAGGTTGTGGCTGATACAGAAATCAAACAAGATGATCCTTTATTACTCAATTATGGCTTTTTAAGCAATGATTTTTTTCTTCTTGATTATGGATTTGTGATACCTTCAAATCCTTATGACTGTATTGAGCTCAAATATGATGGTGCATTTTTGGATGCTGCAAGCATGGCCGCTGGGATTTCCTCTCCCAACTTCTCAGCACCCGCTTCATGGCAGGAACAAGTTTTACGTAAGCTAAATCTAGCTGGAGGAGCTCCTGATCTCAAGGTAAGCTTAGGTGGTCTAGAAATAGTAGATGGCCGCCTATTGGCAGCACTGAGAGTACTTCTTGCGAGTGACATGGAGGCTGTGCAGAACTGTGACCTCAACACTCTCAAATCCCTGGCTGCTGAAGCTCCTCTTGGCATTGCAAATGAAGTGGCAGCCCTGCGAACAACAATTGCTCTGTGTGTCATTGCGTTGGGACACTTCCCCACCAAGATAATGGATGATGAGTCATTATTGAAACAGGTTGCTTCTGGTTCAACTGAACTAGCCATTCAGTTCAGGATTCAAAAGAAATCTGCGATTATAGATGTGATGAGAGATCTGACGAGGAGGGTGAAGCTTCTCTCATCAAAAGAAAAAGCCACTGCTGAAAGTTGA 1191 0.4408 MPRQQCSLPYTRILVILLHEELWAMKLGLKLLQERAKVGSFWWPYVSNLPETYSVPIFFQGEDIKNLQYAPLLHQVNKRCRFLLDFEQECRRTLDNLKPDKHPFGGQEVDASALGWAMSAVSSRAFRLYGDKRPDGTHTDIPMMLPLIDMCNHSFNPNARIVQEKDTSATKMQVKANPMPLPQVVADTEIKQDDPLLLNYGFLSNDFFLLDYGFVIPSNPYDCIELKYDGAFLDAASMAAGISSPNFSAPASWQEQVLRKLNLAGGAPDLKVSLGGLEIVDGRLLAALRVLLASDMEAVQNCDLNTLKSLAAEAPLGIANEVAALRTTIALCVIALGHFPTKIMDDESLLKQVASGSTELAIQFRIQKKSAIIDVMRDLTRRVKLLSSKEKATAES 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3088g00006 396 FunFam Histone-lysine N-methyltransferase setd3 7 214 - -
Pral3088g00006 396 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 211 391 IPR036464 -
Pral3088g00006 396 CDD SET_LSMT 3 215 - -
Pral3088g00006 396 Pfam SET domain 103 201 IPR001214 GO:0005515
Pral3088g00006 396 SUPERFAMILY SET domain 17 219 IPR046341 -
Pral3088g00006 396 Gene3D set domain protein methyltransferase, domain 1 11 214 - -
Pral3088g00006 396 Gene3D - 242 393 IPR036464 -
Pral3088g00006 396 FunFam SET domain containing protein 237 390 - -
Pral3088g00006 396 Pfam Rubisco LSMT substrate-binding 249 370 IPR015353 -
Pral3088g00006 396 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 19 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3088g00006 Pral-Chr3088 25175 29644 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral3088g00006 Rubis-subs-bind 6.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3088g00006 - - vvi:100249103 586.645