Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3088g00005 ATGGCTGCTTCCAAGGCGTTAATGGCTTCCTTAACCCACCTTCGTCCACTAACATGCGCCGCTTCTGTATCAGCATCTTATCCTACACGACTTGTGCCCCAACCTCCCGACCTTATCAAGTGGGTTCAGAAACAAGGTGGTTTCGTGCACAAGGCGGTGAAGATAGCACAAGTTGACTCCAAAGGCCTCGGACTTATGGCTTCGGAAGAAATCCCTAGAGGCAGTGACCTTATTGTTCTTCCGCACCACGTACCCTTGAAGTTCAGGTCTCCTGTATCGAATCATGAAGATGAGCCTGATTCTGTTTTAGTTAATTTAGCCAGCCATGTTCCTGAGGAACTATGGGCTATGAAACTGGGTTTGAAGCTTCTGCAAGAAAGAGCAAAAGTGGGATCGTTTTGGTGGCCATATGTCAGCAATCTCCCTGAAACATACAGTGTGCCTATCTTCTTTCAAGGGGAGGATATAAAGAACTTGCAGTATGCTCCACTGCTTCACCAGGTAAACAAAAGATGTCGTTTTCTTCTTGATTTTGAGCAAGAGTGCAGGCGCACCCTTGACAATCTGAAACCAGATAAGCATCCTTTTGGTGGGCAAGAAGTAGATGCATCTGCACTTGGATGGGCAATGTCAGCAGTCTCATCTAGGGCATTCCGGTTATATGGTGACAAGCGTCCAGATGGGACTCACACAGACATACCAATGATGCTTCCTCTAATTGATATGTGCAACCATAGTTTTAATCCGAATGCCCGAATTGTTCAGGAAAAGGATACCAGTGCAACGAAGATGCAAGTAAAGGTTGTGGCTGATACAGAAATCAAACAAGATGATCCTTTATTACTCAATTATGGCTTTTTAAGCAATGATTTTTTTCTTCTTGATTATGGATTTGTGATACCTTCAAATCCTTATGACTGTATTGAGCTCAAATATGATGGTGCATTTTTGGATGCTGCAAGCATGGCCGCTGGGATTTCCTCTCCCAACTTCTCAGCACCCGCTTCATGGCAGGAACAAGTTTTACGTAAGCTAAATCTAGCTGGAGGAGCTCCTGATCTCAAGGTAAGCTTAGGTGGTCTAGAAATAGTAGATGGCCGCCTATTGGCAGCACTGAGAGTACTTCTTGCGAGTGACATGGAGGCTGTGCAGAACTGTGACCTCAACACTCTCAAATCCCTGGCTGCTGAAGCTCCTCTTGGCATTGCAAATGAAGTGGCAGCCCTGCGAACAACAATTGCTCTGTGTGTCATTGCGTTGGGACACTTCCCCACCAAGATAATGGATGATGAGTCATTATTGAAACAGGTTGCTTCTGGTTCAACTGAACTAGCCATTCAGTTCAGGATTCAAAAGAAATCTGCGATTATAGATGTGATGAGAGATCTGACGAGGAGGGTGAAGCTTCTCTCATCAAAAGAAAAAGCCACTGCTGAAAGTTGA 1443 0.4505 MAASKALMASLTHLRPLTCAASVSASYPTRLVPQPPDLIKWVQKQGGFVHKAVKIAQVDSKGLGLMASEEIPRGSDLIVLPHHVPLKFRSPVSNHEDEPDSVLVNLASHVPEELWAMKLGLKLLQERAKVGSFWWPYVSNLPETYSVPIFFQGEDIKNLQYAPLLHQVNKRCRFLLDFEQECRRTLDNLKPDKHPFGGQEVDASALGWAMSAVSSRAFRLYGDKRPDGTHTDIPMMLPLIDMCNHSFNPNARIVQEKDTSATKMQVKVVADTEIKQDDPLLLNYGFLSNDFFLLDYGFVIPSNPYDCIELKYDGAFLDAASMAAGISSPNFSAPASWQEQVLRKLNLAGGAPDLKVSLGGLEIVDGRLLAALRVLLASDMEAVQNCDLNTLKSLAAEAPLGIANEVAALRTTIALCVIALGHFPTKIMDDESLLKQVASGSTELAIQFRIQKKSAIIDVMRDLTRRVKLLSSKEKATAES 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3088g00005 480 Pfam SET domain 62 285 IPR001214 GO:0005515
Pral3088g00005 480 Pfam Rubisco LSMT substrate-binding 333 454 IPR015353 -
Pral3088g00005 480 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 26 445 - -
Pral3088g00005 480 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 295 475 IPR036464 -
Pral3088g00005 480 CDD SET_LSMT 52 299 - -
Pral3088g00005 480 Gene3D set domain protein methyltransferase, domain 1 6 298 - -
Pral3088g00005 480 SMART set_7 51 291 IPR001214 GO:0005515
Pral3088g00005 480 FunFam SET domain containing protein 321 474 - -
Pral3088g00005 480 Gene3D - 327 477 IPR036464 -
Pral3088g00005 480 ProSiteProfiles SET domain profile. 51 285 IPR001214 GO:0005515
Pral3088g00005 480 FunFam Histone-lysine N-methyltransferase setd3 3 298 - -
Pral3088g00005 480 SUPERFAMILY SET domain 33 303 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3088g00005 Pral-Chr3088 24875 29644 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral3088g00005 SET 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3088g00005 - - qsa:O6P43_025913 750.355