Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3088g00004 ATGGCTGCTTCCAAGGCGTTAATGGCTTCCTTAACCCACCTTCGTCCACTAACATGCGCCGCTTCTGTATCAGCATCTTATCCTACACGACTTGTGCCCCAACCTCCCGACCTTATCAAGTGGGTTCAGAAACAAGGTGGTTTCGTGCACAAGGCGGTGAAGATAGCACAAGTTGACTCCAAAGGCCTCGGACTTATGGCTTCGGAAGAAATCCCTAGAGGCAGTGACCTTATTGTTCTTCCGCACCACGTACCCTTGAAGTTCAGGTCTCCTGTATCGAATCATGAAGATGAGCCTGATTCTGTTTTAGTTAATTTAGCCAGCCATGTTCCTGAGGAACTATGGGCTATGAAACTGGGTTTGAAGCTTCTGCAAGAAAGAGCAAAAGTGGGATCGTTTTGGTGGCCATATGTCAGCAATCTCCCTGAAACATACAGTGTGCCTATCTTCTTTCAAGGGGAGGATATAAAGAACTTGCAGTATGCTCCACTGCTTCACCAGGTAAACAAAAGATGTCGTTTTCTTCTTGATTTTGAGCAAGAGTGCAGGCGCACCCTTGACAATCTGAAACCAGATAAGCATCCTTTTGGTGGGCAAGAAGTAGATGCATCTGCACTTGGATGGGCAATGTCAGCAGTCTCATCTAGGGCATTCCGGTTATATGGTGACAAGCGTCCAGATGGGACTCACACAGACATACCAATGATGCTTCCTCTAATTGATATGTGCAACCATAGTTTTAATCCGAATGCCCGAATTGTTCAGGAAAAGGATACCAGTGCAACGAAGATGCAAGTAAAGGCTAACCCTATGCCTTTGCCTCAGGTTGTGGCTGATACAGAAATCAAACAAGATGATCCTTTATTACTCAATTATGGCTTTTTAAGCAATGATTTTTTTCTTCTTGATTATGGATTTGTGATACCTTCAAATCCTTATGACTGTATTGAGCTCAAATATGATGGTGCATTTTTGGATGCTGCAAGCATGGCCGCTGGGATTTCCTCTCCCAACTTCTCAGCACCCGCTTCATGGCAGGAACAAGTTTTACGTAAGCTAAATCTAGCTGGAGGAGCTCCTGATCTCAAGGTAAGCTTAGGTGGTCTAGAAATAGTAGATGGCCGCCTATTGGCAGCACTGAGAGTACTTCTTGCGAGTGACATGGAGGCTGTGCAGAACTGTGACCTCAACACTCTCAAATCCCTGGCTGCTGAAGCTCCTCTTGGCATTGCAAATGAAGTGGCAGCCCTGCGAACAACAATTGCTCTGTGTGTCATTGCGTTGGGACACTTCCCCACCAAGATAATGGATGATGAGTCATTATTGAAACAGGTTGCTTCTGGTTCAACTGAACTAGCCATTCAGTTCAGGATTCAAAAGAAATCTGCGATTATAGATGTGATGAGAGATCTGACGAGGAGGGTGAAGCTTCTCTCATCAAAAGAAAAAGCCACTGCTGAAAGTTGA 1467 0.4519 MAASKALMASLTHLRPLTCAASVSASYPTRLVPQPPDLIKWVQKQGGFVHKAVKIAQVDSKGLGLMASEEIPRGSDLIVLPHHVPLKFRSPVSNHEDEPDSVLVNLASHVPEELWAMKLGLKLLQERAKVGSFWWPYVSNLPETYSVPIFFQGEDIKNLQYAPLLHQVNKRCRFLLDFEQECRRTLDNLKPDKHPFGGQEVDASALGWAMSAVSSRAFRLYGDKRPDGTHTDIPMMLPLIDMCNHSFNPNARIVQEKDTSATKMQVKANPMPLPQVVADTEIKQDDPLLLNYGFLSNDFFLLDYGFVIPSNPYDCIELKYDGAFLDAASMAAGISSPNFSAPASWQEQVLRKLNLAGGAPDLKVSLGGLEIVDGRLLAALRVLLASDMEAVQNCDLNTLKSLAAEAPLGIANEVAALRTTIALCVIALGHFPTKIMDDESLLKQVASGSTELAIQFRIQKKSAIIDVMRDLTRRVKLLSSKEKATAES 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3088g00004 488 Pfam SET domain 62 293 IPR001214 GO:0005515
Pral3088g00004 488 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 26 453 - -
Pral3088g00004 488 FunFam Histone-lysine N-methyltransferase setd3 3 306 - -
Pral3088g00004 488 SMART set_7 51 299 IPR001214 GO:0005515
Pral3088g00004 488 CDD SET_LSMT 52 307 - -
Pral3088g00004 488 SUPERFAMILY SET domain 33 311 IPR046341 -
Pral3088g00004 488 Gene3D - 335 485 IPR036464 -
Pral3088g00004 488 ProSiteProfiles SET domain profile. 51 293 IPR001214 GO:0005515
Pral3088g00004 488 Gene3D set domain protein methyltransferase, domain 1 6 306 - -
Pral3088g00004 488 FunFam SET domain containing protein 329 482 - -
Pral3088g00004 488 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 303 483 IPR036464 -
Pral3088g00004 488 Pfam Rubisco LSMT substrate-binding 341 462 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3088g00004 Pral-Chr3088 24875 29644 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral3088g00004 SET 2.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3088g00004 - - qsa:O6P43_025913 743.036