Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3081g00011 ATGGCTTCATCTTCTTCCTCTACTCCATCTTCTCAATCCCCCAAGAAATATGATGTTTTTATTAGCTTTAGAGGTGAGGACACCCGCTTGAATTTCACAAGCCATCTTTATTATGCTCTTCGTGGAAAACAAATATATACATACATCGATGACAGACTCGAGAAAGGAGACGAGGTATGGCCATCTCTTGAGAAAGCCATTGAAGATTCAACTATGTTCCTTGTGGTGTTCTCAGAAAACTATGCATCTTCCACGTGGTGCTTGAAGGAACTTGGCAAAATATTAGACTTCTGCAGAAATCAAGGTCACCTTGTTATACCTGTGTTCTATCGAGTAGATCCTTCAGCCGTGAGGAAGCAATCTGGGAGTTACCAGAAAGCATTTGAAAAACATGAGCACAAAGGCATCAACACGCAACAACGGCACAAGTGGAGGGAGGCTCTCACTCATGCTGCCAATTTATCCGGTTGGCATTGTAGCCCCGACAGGAATGAAGCAGAGCTAATTACAAACATAGTGAAATTTGTTAAGCAGAAGTTGGACTATATGTATCAAAGTAAAGATAATCTGAAAGGCTTGATTGGAATTCAGAAAAGAATGGCGGCTGTAGAATCATTGTTGTGTAAAGGTTCAAATAATGATGGTTGCCAATTCATTGGCATTTGGGGCATGGGCGGTGTGGGCAAAACAACTCTTGCAAGAGCATTGTTTAACAAATTGTGTTTTACATATGATGGGTTTTGCTTTTTGGCTAATGTAAGGGAAGAATCAAGGAGACATGGAATAGATGCTTTGAGGGGAAAACTTATTTTGAAGTTATCAGGGGAGAAAGAATCTCACATTGGCATGCTTGATGCATTAGATCCTTATGCCATGAGTAGTAGACTTGATCGGAAAAAAGTTTTCATTGTGCTTGATGATGTTGATGATGTTGAGCAATTACAAAATTTAGTTGGAAGATATGAATTTGGATCAGGTAGTAAAATCTTGATAACGACCAGAGATAGGCATGTGCTTGATGGTATAAAAGTGGTTGATATATATGTTCTTGATCATTTGAATTCTTATGAAGCTTTTGACCTATTCTCCATCAATACCTTCAGAAACAACTATGCTGACAAGAAGATAAAAAAGCTAGCAAAAAAAGTGATTCAATATGCAGATGGAAATCCATTGGCGCTAAAGGTTTTAGGCTCACTCTTGAATGGCAAAAATCAAGAAGCATGGGAAAGCCAATTGGACAAGCTTCAAAAATTTCCTTGTGTACAAATTAATCATATCCTCAAATCGAGCTTCGAAGAACTTGATAAGGAAGAGAGAAATATTTTCATGCACATCGCATGTTTCTTTGATAATTATAATATTGAGGATGTAAAACACATGTTAAATGCATGTGGTTATTCAACCGATATTGGATTGAAAAGACTTGAAGAGAAAGCTCTTTTAGATGTTCATAAGAAAAGAATAGGTATGCACCATCTGATAAAAGAAATGGGTAGAGAAATTGTCCGTGACGAATCATTAGAGGGTGTTCCTAACAAGTGCAATATATTATGGATTTTCAAGAATAATTCTGAAATATTAAAGAAAAAAATGGTGAGTGCAGCCATTGAAGGCATGATTATGGACCTTTCGGAAGTTGAAGAGATGTACATAATTATTGAAGCCCTTTGTTTAATGCCCAAGCTAAAGTTTCTTAAATTTTATGGAAATTTTAATGGTCAGTTCAGGAAGAAGTTAAAAGTTTCTTCTCGTATGAAGTCTTTGCCAAGAAATCTCATGCTACTGGATTGGGTGGGATGCCCTTTAAAGGCCTTGCCGACAAAATTCAAGTATGAAAATCTTGTTGAAATAAACATGCCCAACAGCAATTTGACAAAACTTTGGGAAGGAGAGCAGAATCTTGTGAATTTAAGCAGAATAGATCTTCGTGAATCAAAAGACTTGATTGAGCTGCCAAATTTTTCCAAGGCCATACATCTTGCAGAAGTTGATCTCGAAG 2002 0.3726 MASSSSSTPSSQSPKKYDVFISFRGEDTRLNFTSHLYYALRGKQIYTYIDDRLEKGDEVWPSLEKAIEDSTMFLVVFSENYASSTWCLKELGKILDFCRNQGHLVIPVFYRVDPSAVRKQSGSYQKAFEKHEHKGINTQQRHKWREALTHAANLSGWHCSPDRNEAELITNIVKFVKQKLDYMYQSKDNLKGLIGIQKRMAAVESLLCKGSNNDGCQFIGIWGMGGVGKTTLARALFNKLCFTYDGFCFLANVREESRRHGIDALRGKLILKLSGEKESHIGMLDALDPYAMSSRLDRKKVFIVLDDVDDVEQLQNLVGRYEFGSGSKILITTRDRHVLDGIKVVDIYVLDHLNSYEAFDLFSINTFRNNYADKKIKKLAKKVIQYADGNPLALKVLGSLLNGKNQEAWESQLDKLQKFPCVQINHILKSSFEELDKEERNIFMHIACFFDNYNIEDVKHMLNACGYSTDIGLKRLEEKALLDVHKKRIGMHHLIKEMGREIVRDESLEGVPNKCNILWIFKNNSEILKKKMVSAAIEGMIMDLSEVEEMYIIIEALCLMPKLKFLKFYGNFNGQFRKKLKVSSRMKSLPRNLMLLDWVGCPLKALPTKFKYENLVEINMPNSNLTKLWEGEQNLVNLSRIDLRESKDLIELPNFSKAIHLAEVDLE 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3081g00011 667 ProSiteProfiles TIR domain profile. 15 180 IPR000157 GO:0007165
Pral3081g00011 667 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 157 IPR035897 -
Pral3081g00011 667 Gene3D Ribonuclease Inhibitor 501 667 IPR032675 -
Pral3081g00011 667 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 666 IPR044974 GO:0006952
Pral3081g00011 667 PRINTS Disease resistance protein signature 295 309 - -
Pral3081g00011 667 PRINTS Disease resistance protein signature 387 401 - -
Pral3081g00011 667 PRINTS Disease resistance protein signature 218 233 - -
Pral3081g00011 667 PRINTS Disease resistance protein signature 633 649 - -
Pral3081g00011 667 SMART till_3 16 154 IPR000157 GO:0007165
Pral3081g00011 667 Gene3D - 184 348 IPR027417 -
Pral3081g00011 667 Pfam TIR domain 16 196 IPR000157 GO:0007165
Pral3081g00011 667 SUPERFAMILY L domain-like 541 666 - -
Pral3081g00011 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 446 IPR027417 -
Pral3081g00011 667 Gene3D - 352 436 IPR042197 -
Pral3081g00011 667 Gene3D - 14 183 IPR035897 -
Pral3081g00011 667 SUPERFAMILY "Winged helix" DNA-binding domain 423 528 IPR036390 -
Pral3081g00011 667 Pfam NB-ARC domain 200 435 IPR002182 GO:0043531
Pral3081g00011 667 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 182 - -
Pral3081g00011 667 Pfam Leucine Rich Repeat 614 633 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3081g00011 Pral-Chr3081 53436 56266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3081g00011 9 667 WRKY Transcription Factor Family AT4G12020 29.464 2.74e-76 265