Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3080g00001 ATGGCTTCCCTTCATTATCCTCCATGCCCATCTGGGCTAGAGATTGAAACGACGAGGATAGATGAAGAAGAAGCATCAAGCGGTCCGAAGAAGAAGAGTGATGACGTTATTGATGGGGGAGAAGAGAAGGGGATATGGCTGACGTGGAAGGATGTATGGGTGAGAGCTTCTTCAAGTGGGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGGATTAATGGAAGCAGAACAATACTGGCAGGTCTCACTGGTTATGCCAAACCAGGTCAGCTTTTGGCCATCATGGGTCCTTCTGGCTGTGGCAAGTCCACTCTTCTGGATACTTTAGCAGGGAGATTAGGTCCAAAAACAAGGCAGGCAGGGGAGATTCTTATTAACGGCCACAAACAAGTACTCGCCTATGGGACCTCGGCATATGTGACACAAGATGACGCTTTGCTCACAACCCTAACAGTTGGAGAAGCAGTGTACTATTCAGCTCAGCTTCAATTACCAGACACAATGTCAAAGGAAGAGAAAAAGCAGAGAGCAGAGTTCACAATAAGAGAAATGGGTCTTCAAGACGCCATTAACACCAGAATTGGAGGTTGGGGTTGTAAGGGAATCAGTGGAGGCCAAAAGAGGAGAGTGAGTATTTGTATAGAGATCCTGACACGTCCAAGACTTCTGTTTCTTGATGAACCAACCAGTGGACTTGACAGTGCAGCCTCGTACTATGTTATGAGCAGAATCGCCAGCCTTGATCGGAAGGATGGGATTCAGAGGACCATTATTGCGTCTATTCATCAACCTAGTACTGAAGTGTTTCAGCTTTTTGATAATCTGTGTCTTCTTTCTTCCGGAAGAACTGTGTTCTTTGGTCCTACTATTTCTGCAGCAAGTGAGTTCTTTGCCTCAAATGGATTTCCCTGTCCTGCTGTCCAGAATCCATCCGATCATTTCTTGAAAACTATAAACAAGGATTTTGATGATCAGGTCTGCTTCATGAAACCTACAGAAGAAGCAATAGAAATGCTTGTGAAATCATACAAGTCTTCTAATTTCAACCGACAAGTTCAAGCAGAAGTAGCAGCATTATCTGCACAGGAAAGTGGAATGGTGGTGGAGAAGAAGAAGAAGAAAAAGCATGCAAGCGATTCCCTACTCAGTGCATTGTTCTTACAAAGAGATCATTCTTGA 1176 0.4422 MASLHYPPCPSGLEIETTRIDEEEASSGPKKKSDDVIDGGEEKGIWLTWKDVWVRASSSGKKKKKKKKKGINGSRTILAGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLGPKTRQAGEILINGHKQVLAYGTSAYVTQDDALLTTLTVGEAVYYSAQLQLPDTMSKEEKKQRAEFTIREMGLQDAINTRIGGWGCKGISGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMSRIASLDRKDGIQRTIIASIHQPSTEVFQLFDNLCLLSSGRTVFFGPTISAASEFFASNGFPCPAVQNPSDHFLKTINKDFDDQVCFMKPTEEAIEMLVKSYKSSNFNRQVQAEVAALSAQESGMVVEKKKKKKHASDSLLSALFLQRDHS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3080g00001 391 ProSitePatterns ABC transporters family signature. 201 215 IPR017871 GO:0005524|GO:0016887
Pral3080g00001 391 Pfam ABC transporter 82 229 IPR003439 GO:0005524
Pral3080g00001 391 MobiDBLite consensus disorder prediction 16 38 - -
Pral3080g00001 391 Pfam ABC-2 type transporter 261 379 IPR043926 GO:0140359
Pral3080g00001 391 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 54 304 IPR003439 GO:0005524
Pral3080g00001 391 MobiDBLite consensus disorder prediction 1 38 - -
Pral3080g00001 391 FunFam ABC transporter G family member 11 45 341 - -
Pral3080g00001 391 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 40 376 - -
Pral3080g00001 391 SMART AAA_5 87 281 IPR003593 GO:0016887
Pral3080g00001 391 Gene3D - 64 381 IPR027417 -
Pral3080g00001 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 288 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3080g00001 Pral-Chr3080 4 3751 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3080g00001 88 265 Calmodulin-binding Proteins AT2G36910 31.892 9.40e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3080g00001 K05681 - gmx:112998761 483.026