LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3058g00009	ATGGGTTGCCCTGCACGTCGAACCCAGGTGTTGTCAGGCCTGGTTCAATGGTTATATAAATACACTACGTATTCCTATATAAATATGGCCTTGCAGGGAACGGAGAACGCTTACGAAGATCCAAATCTTGCCGACGATGAACAAGAAGAATTCTCCGAATCCTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCTATTGTACTGTCTTGTGGTCACATATCCTGTTTCTGGTGTGTCCATCAGTCAATGAGCCCCCTTTGTGAGTCTCATTGTCCAATTTGTAGGCGTCCATATTATCACTTTCCAACAATCTGTTGGATGCTTCACTTTTTGCTTCAGAAGATGTATCCTGCTGCTTACAAGAGAAGGGAAATTCAAACTCTTGAGGAAGAAAAGAAACGGGGCACTTTCTCTCCTCAAATTGATGGTGATAATCTTGCGTCAGACGTCAAGTTTGATCATCCAGGTACTTCATCTCCCTGCTATGCTGGAAATCTGGTTTCCAACCCGCAGAATGCCGGACTCTCTGCAAGTATGGAGCAATCAGGGTCTGAAACTCAAAAGCAAAATAACGGAAACATCTGTTCTAAAGATGTTTTTGGTGGAACTCCTGAAGATTTTGGCACGCCTGCTCAAGTAAAAATGCTGCCTCAGACCGATCGGCAGGAAAAGATATCAGCTGCAGATGTGGTGTGTTCAACATGCAAGCAACTGCTTTTTCATCCTGTTGTTCTTAACTGTGGTCATGTATACTGTGAGTCTTGCATCAAGAACTCAACTGATGAGATGCTTAGATGCCAAATTTGTCAACTCCCACATCCAAGAGGATTTCCAAAAGTTTGTTTGGAGCTTGATCACTTTATAAAGGAACAATTCCCTGAGGAATATGCAAAGCAAAGAGATGCTGTTCAACTCAGGCATATCAACGATAAACCTGAGACCCCTTCTTGTTCATTGAACGAGGGTGGAGGAGGAAAAGCAGCATGGTGGTCTGATCCTCACTCAAAAGTACATGTTGGAGTTGGTTGTGATTTTTGTGGGATGTTTCCAATTGTTGGGGATAGATACAGATGCAAAGACTGTAAGGAGAAGGTTGGTTTTGATCTTTGCGCTGATTGTTATAAAATTCGCAGCAAGATTCCTGGTCGGTTCAATCAGCAGCACACTCCAGATCACGAGTTTGAGCTTAACTCAGTGAACATGATCCATAGCATAATAACACTGGTAACTGGACGGTTAGGACATGGTTCCACTGAAAACTTGCTGATGGAAGGCCTAGGGTTTAGACCTGAAGATCCCAATTTGGTTGTTGATGCTGATGAAGAACATGCCCAGAATGACTCTGAAGGCACCAATTGA	1365	0.4322	MGCPARRTQVLSGLVQWLYKYTTYSYINMALQGTENAYEDPNLADDEQEEFSESFVCCVCLDLLYKPIVLSCGHISCFWCVHQSMSPLCESHCPICRRPYYHFPTICWMLHFLLQKMYPAAYKRREIQTLEEEKKRGTFSPQIDGDNLASDVKFDHPGTSSPCYAGNLVSNPQNAGLSASMEQSGSETQKQNNGNICSKDVFGGTPEDFGTPAQVKMLPQTDRQEKISAADVVCSTCKQLLFHPVVLNCGHVYCESCIKNSTDEMLRCQICQLPHPRGFPKVCLELDHFIKEQFPEEYAKQRDAVQLRHINDKPETPSCSLNEGGGGKAAWWSDPHSKVHVGVGCDFCGMFPIVGDRYRCKDCKEKVGFDLCADCYKIRSKIPGRFNQQHTPDHEFELNSVNMIHSIITLVTGRLGHGSTENLLMEGLGFRPEDPNLVVDADEEHAQNDSEGTN	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3058g00009	454	SUPERFAMILY	RING/U-box	332	397	-	-
	Pral3058g00009	454	FunFam	E3 ubiquitin-protein ligase PRT1	334	399	-	-
	Pral3058g00009	454	SMART	ring_2	234	271	IPR001841	-
	Pral3058g00009	454	SMART	ring_2	57	96	IPR001841	-
	Pral3058g00009	454	Pfam	Zinc finger, ZZ type	340	378	IPR000433	GO:0008270
	Pral3058g00009	454	SUPERFAMILY	RING/U-box	231	294	-	-
	Pral3058g00009	454	FunFam	E3 ubiquitin-protein ligase PRT1	221	316	-	-
	Pral3058g00009	454	SMART	zz_5	339	385	IPR000433	GO:0008270
	Pral3058g00009	454	ProSitePatterns	Zinc finger RING-type signature.	249	258	IPR017907	-
	Pral3058g00009	454	ProSiteProfiles	Zinc finger ZZ-type profile.	340	404	IPR000433	GO:0008270
	Pral3058g00009	454	Gene3D	-	333	399	IPR043145	-
	Pral3058g00009	454	ProSiteProfiles	Zinc finger RING-type profile.	234	272	IPR001841	-
	Pral3058g00009	454	SUPERFAMILY	RING/U-box	45	106	-	-
	Pral3058g00009	454	ProSiteProfiles	Zinc finger RING-type profile.	57	97	IPR001841	-
	Pral3058g00009	454	Pfam	RING-type zinc-finger	234	265	IPR027370	-
	Pral3058g00009	454	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	220	317	IPR013083	-
	Pral3058g00009	454	FunFam	E3 ubiquitin-protein ligase PRT1	48	143	-	-
	Pral3058g00009	454	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	29	152	IPR013083	-
	Pral3058g00009	454	PANTHER	UNCHARACTERIZED	46	398	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3058g00009	Pral-Chr3058	19275	26489	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3058g00009	42	97	C3H Transcription Factor Family	AT1G74990	36.842	4.13e-07	47.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3058g00009	-		-	gmx:100782681	521.161