Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3048g00010 ATGGGGAAGCCCACCGGTAAGAAGAAGGATCCTGTAACACATAAGGCTGCGCATGCAAGCGGCAAGCAGAGCAAGCCCTCTGAGAGGACTTCCAAAGCTTTCGACGAAGACACGGCAATCTTCATCAACATGTCACAGGATCTCAAGGAAGAAGGCAATAGACTCTTTCAGAAAAGGGATCATGAGGGGGCTGTGTTGAAGTATGAAAAGGCCCTCAAGCTCCTTCCCGGAAACCACATAGATGTGGCACACTTGCGTACCAATATGGCTGCGTGTTATATGCAACTCGGTCTTGGAGAATACCCTCGAGCAATCAATGAATGTAATCTAGCTCTTGAAGTATCACAAAGATATAGCAAGGCTCTATTGAGAAGAGCAAAGTGCTATGAAGCATTGAATCGATTCGATTATGCGCTCAGAGATGTTAATTTTGTTTTGACCGTGGAGCCTAATAATCTCAATGCATTGGAGATTCTTGGGAGTTTGAAAAAGACCATGGAAGAAAAAGGCATCACTATTGATGAGAAAGATTTGGCAAGTTTGGAGCAACCTACCGCTGCCCCTGTGAGCAAAGTGGTAAGAGAAAAAATAAAGAAAAAGAAAAGTAAAAAGAGTGAGAGCAAGGCAAAGGATAAGGTGATTCTTGAGGATACTGCGAATGCTGTTAAAGATAAAGAAGTGGTGTCAAAAACAATTGCGAAAAAGGAAGTGGTTCTGGAGCCTGTTAAAGAAGAAAAAGTAGTCACAAGGACGGCGAAGTTGGTATTTGGAGAGGATATAAGGTGGGCGCAGTTGCCATTGAATTGTAGCATGAGGTTGGTGAGGGATATAATTAAGGATCGATTTGCTGGATTGAAGGGTGTTCTTGTTAAATATAAGGATCAAGAGGGTGATTTGGTTACCATCACTACTACTGATGAATTAAGATTAGCTGAATCTTCAGGTGATGCCTTGGGTTCTCTTCGGCTCTATATTACGGAAGTCAATCCAGAGGAGGAACCGACTTATGATGGAATAACCAATGGGGATGAGATGCCAGGTGATGGTATTGAGCATGCGCCAAAGGAAGCAGGCAAGGATTTGGCGAATAAGCTGACTAATGTGGAGGATTGGATAATCCAATTTGCTAGGATGTTCAAGAACCATGTTGGGTTTGATTCTGATTCATATTTGGATATGCATGAGGTGGGAATGAAGCTATATTCAGAAGCCTTGGAAGATGTGGTAACGAGTGACGATGCTCAAGAGCTTTTTGAAATCGCTGCAGATAAATTTCAAGAGATGGCGGCTTTGGCATTATTTAATTGGGGTAATGTTCACATGTCCAGGGCAAGGAGGCGTGTTTCCATTTCAGAGGATGGGTCAAAAGAATCTGCTCATGAGCGAATTAAAGCTGCATATGAGTGGGCAAGAAAGGAGTACAAGAAAGCAGAGATGAGATATGAAGAAGCCTTGAAAATGAAACCAGACTTCTATGAGGGATTTCTGGCACTTGGCCATCAGCAGTTCGAGCAAGCAAAGCTCTGCTGGTATTATGCATTGGCATGCAAAATGAATTTAGAGGATGGCCCTTCCAGTGAGGTTTTACAACTATATAACAAGGCAGAGGACAGCATGGATAGAGGCATGCTGATGTGGGAGGAGATTGAAGAGCAGCGTTTAAATGGACTATCCAAATTTGATAAATATAGAGCGCATTTGGAAAAAATGGGCTTAGATGGTCTTCTCAAGGATATTTCTTCTGATGAAGCTGCAGAGCAGGCTACAAATGTGAGGTCCCAAATATATATTTTATGGGGCACCATATTGTATGAGCGTTCTGTTGTGGAATATAAGATTGGCTTATCTTCATGGGAGGAATGTCTGGAGGTTGCTGTTGAGAAGTTTGAACTTGCCGGAGCTTCTCCAACAGATATAGGGGTCATGATAAAGAATCATTGTTCCAATCAAACAGCACTAGAAGGTTTGGGTTTCAAAATCGACGAGATAGTACAGGCGTGGAATGAAATGTATGATGCTCAGAGGTGGCAATTTGGTGTACCATCGTTTCGCCTTGAACCACTGTTCCGGCGGCGTGTTCCGAGACTTCATCACATCTTGGAGCATTTTTGA 2112 0.4295 MGKPTGKKKDPVTHKAAHASGKQSKPSERTSKAFDEDTAIFINMSQDLKEEGNRLFQKRDHEGAVLKYEKALKLLPGNHIDVAHLRTNMAACYMQLGLGEYPRAINECNLALEVSQRYSKALLRRAKCYEALNRFDYALRDVNFVLTVEPNNLNALEILGSLKKTMEEKGITIDEKDLASLEQPTAAPVSKVVREKIKKKKSKKSESKAKDKVILEDTANAVKDKEVVSKTIAKKEVVLEPVKEEKVVTRTAKLVFGEDIRWAQLPLNCSMRLVRDIIKDRFAGLKGVLVKYKDQEGDLVTITTTDELRLAESSGDALGSLRLYITEVNPEEEPTYDGITNGDEMPGDGIEHAPKEAGKDLANKLTNVEDWIIQFARMFKNHVGFDSDSYLDMHEVGMKLYSEALEDVVTSDDAQELFEIAADKFQEMAALALFNWGNVHMSRARRRVSISEDGSKESAHERIKAAYEWARKEYKKAEMRYEEALKMKPDFYEGFLALGHQQFEQAKLCWYYALACKMNLEDGPSSEVLQLYNKAEDSMDRGMLMWEEIEEQRLNGLSKFDKYRAHLEKMGLDGLLKDISSDEAAEQATNVRSQIYILWGTILYERSVVEYKIGLSSWEECLEVAVEKFELAGASPTDIGVMIKNHCSNQTALEGLGFKIDEIVQAWNEMYDAQRWQFGVPSFRLEPLFRRRVPRLHHILEHF 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3048g00010 703 Coils Coil 467 487 - -
Pral3048g00010 703 Pfam PB1 domain 250 326 IPR000270 GO:0005515
Pral3048g00010 703 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Pral3048g00010 703 PANTHER PROTEIN CLMP1 1 702 IPR044517 -
Pral3048g00010 703 ProSiteProfiles PB1 domain profile. 249 328 IPR000270 GO:0005515
Pral3048g00010 703 SUPERFAMILY TPR-like 34 167 IPR011990 GO:0005515
Pral3048g00010 703 SMART PB1_new 249 328 IPR000270 GO:0005515
Pral3048g00010 703 MobiDBLite consensus disorder prediction 1 33 - -
Pral3048g00010 703 SUPERFAMILY TPR-like 426 661 IPR011990 GO:0005515
Pral3048g00010 703 Gene3D Tetratricopeptide repeat domain 43 173 IPR011990 GO:0005515
Pral3048g00010 703 Gene3D - 240 328 - -
Pral3048g00010 703 CDD PB1 257 326 - -
Pral3048g00010 703 MobiDBLite consensus disorder prediction 1 16 - -
Pral3048g00010 703 SUPERFAMILY CAD & PB1 domains 249 337 - -
Pral3048g00010 703 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515
Pral3048g00010 703 SMART tpr_5 83 118 IPR019734 GO:0005515
Pral3048g00010 703 SMART tpr_5 119 152 IPR019734 GO:0005515
Pral3048g00010 703 SMART tpr_5 458 491 IPR019734 GO:0005515
Pral3048g00010 703 SMART tpr_5 45 78 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3048g00010 Pral-Chr3048 47084 49646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3048g00010 28 152 Calmodulin-binding Proteins AT3G25230 32.117 4.05e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3048g00010 K26538 - qsa:O6P43_015720 1092.8