Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral3048g00003 | ATGGCGTACCACAACCATCATCTCTCTCAAGACCTGCCGCTCCACCATTTCACAGAGCAATCTCATCACCAGCAGCAGCAGAACCAGGCGCTGACTGATAACTCCTTGCGGACGATATTGCAGGACCCGACCAGTAAGGCCGGCTCCGATCCCCACCAACACCACCACCCGCTTCAAACCGCTCCCAATTGGCTCAACAACGCTCTCCTCCGAACTCACTACACCGACAATAACAACGGCAACAACAGTAACAGAACTGCTCCTAACAATACCAACGCCACCAATTTCCTCAACCTCCATACCGCCGCCTCCGACTCCACCGGAGCTGCTTCCCAATCCTCCAGCCAATGGCTGGCACGCCCGATCCTCCACCGGAATCATAGCGACGTCATTGACGACGTCACCGCCGGGGACTCTATCATCGCCGGTGCGACTTTGTCCCATGAGTCCGCGGATTTAAAGGCGACCGGTGACAACCTCAACAGCAAGGGCGAGGCGGTGGTGGTGGACAGCTCCGGCGCCACCGGGGACGGTTTGATGAACTGGCAGAATGCTCGCTTCAAGGCGGAGATTCTTGCCCACCCGCTGTACGAACAGCTGCTATCGGCACACGTGGCGTGCCTGCGGATCGCCACGCCGGTTGACCAGCTGCCGAGGATCGATGCTCAACTGGCTCAGTCGCAGAATGTGGTTGCCAAGTACTCGGCGTTGGGACACGGGAGCCAGAGCATGGTTGGGGACGATAAGGAACTCGATCAGTTCATGTCGCACTATGTCTTGTTGCTTTGTTCATTCAAAGAACAACTTCAACAACACGTCAGGGTCCATGCAATGGAAGCAGTGATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCGGGAGAAGGCACAGGGGCAACAATGTCAGATGATGAAGACGATCAGGTGGACAGTGATGCCAACCTGTTTGATGGTAGTTTGGATGGTTCAGACATGGGATTTGGTCCCCTGATTCCAACGGAGAACGAGAGGTCCCTCATGGAGCGTGTAAGGCAGGAATTAAAGCACGAACTCAAACAGGGCTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTGCGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACCACCTCCGTTCTTAAAACTTGGTGGCAGTCACATGCCAAGTGGCCTTACCCTACAGAGGAAGACAAAGCAAGGTTGGTTCAGGAAACTGGCTTGCAATTGAAGCAGATTAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAATCCCTCCACCTCAACGGTGTTGAAGAGCAAGCGCAAAAGGTGA | 1350 | 0.5356 | MAYHNHHLSQDLPLHHFTEQSHHQQQQNQALTDNSLRTILQDPTSKAGSDPHQHHHPLQTAPNWLNNALLRTHYTDNNNGNNSNRTAPNNTNATNFLNLHTAASDSTGAASQSSSQWLARPILHRNHSDVIDDVTAGDSIIAGATLSHESADLKATGDNLNSKGEAVVVDSSGATGDGLMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHGSQSMVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGSDMGFGPLIPTENERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKTWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR | 449 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral3048g00003 | 449 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 32 | 434 | - | - | |
Pral3048g00003 | 449 | Pfam | ELK domain | 352 | 373 | IPR005539 | GO:0003677 | |
Pral3048g00003 | 449 | Pfam | Homeobox KN domain | 392 | 431 | IPR008422 | GO:0003677|GO:0006355 | |
Pral3048g00003 | 449 | SMART | HOX_1 | 374 | 439 | IPR001356 | GO:0003677 | |
Pral3048g00003 | 449 | MobiDBLite | consensus disorder prediction | 41 | 60 | - | - | |
Pral3048g00003 | 449 | CDD | homeodomain | 375 | 436 | IPR001356 | GO:0003677 | |
Pral3048g00003 | 449 | Pfam | KNOX1 domain | 188 | 228 | IPR005540 | GO:0003677|GO:0005634 | |
Pral3048g00003 | 449 | SMART | KNOX2_2 | 241 | 296 | IPR005541 | GO:0003677|GO:0005634 | |
Pral3048g00003 | 449 | Gene3D | - | 373 | 434 | - | - | |
Pral3048g00003 | 449 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 373 | 434 | - | - | |
Pral3048g00003 | 449 | ProSiteProfiles | 'Homeobox' domain profile. | 372 | 435 | IPR001356 | GO:0003677 | |
Pral3048g00003 | 449 | SUPERFAMILY | Homeodomain-like | 374 | 437 | IPR009057 | - | |
Pral3048g00003 | 449 | SMART | KNOX1_2 | 185 | 229 | IPR005540 | GO:0003677|GO:0005634 | |
Pral3048g00003 | 449 | Pfam | KNOX2 domain | 245 | 295 | IPR005541 | GO:0003677|GO:0005634 | |
Pral3048g00003 | 449 | ProSiteProfiles | ELK domain profile. | 352 | 372 | IPR005539 | GO:0003677 | |
Pral3048g00003 | 449 | SMART | ELK_2 | 352 | 373 | IPR005539 | GO:0003677 | |
Pral3048g00003 | 449 | MobiDBLite | consensus disorder prediction | 295 | 314 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral3048g00003 | Pral-Chr3048 | 9373 | 12911 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral3048g00003 | 1 | 449 | Homeobox Transcription Factor Family | AT5G25220 | 66.170 | 0.0 | 565 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-KNOX | Pral3048g00003 | KNOX2 | 1.3e-21 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral3048g00003 | - | - | pcin:129303573 | 795.423 |