Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3044g00005 ATGGCGACTGAAACTCCTCCTTCTCTTCCTCCGTACCCAGAGATGATAATGAAAGCTCTGGAGGCTCTGAACGAACCCAATGGTTCGAACAAATCGTCGATCGCGAAGCACATAGAGACCACCTACAGCGACTTGCCGGCGACCCACTCCACGTTGCTGTCTCACCATCTGAACAGGATGAAGGACGCCGGGGAGCTTGTGTTCGCCAAGAACAACTACATGAAACCCGACCCGAATGCTCCACCCAAGAGAGGCCGGGGCAGGCCACCCAAGGCCAAGGCTCCACTGCCTCCGGGTACCGTACTTTCTCCGCCCCGACCCAGAGGCCGTCCACCCAAGGACCCGAATGCCTCGTCCAAGCCCAAAACCTCAACCGGCAGCGGCAGGCCCAGAGGAAGGCCCAAGAAGGTGGCCCGAACTTCACCGGAAACTGGGCCAGTTGTGAGTCGGGGCAGAGGCCGGCCGCCGAAGGAGAAGCCCACTCTGACGGAAGTGAGCGTTGAACAATAG 510 0.5961 MATETPPSLPPYPEMIMKALEALNEPNGSNKSSIAKHIETTYSDLPATHSTLLSHHLNRMKDAGELVFAKNNYMKPDPNAPPKRGRGRPPKAKAPLPPGTVLSPPRPRGRPPKDPNASSKPKTSTGSGRPRGRPKKVARTSPETGPVVSRGRGRPPKEKPTLTEVSVEQ 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3044g00005 169 Pfam linker histone H1 and H5 family 10 70 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral3044g00005 169 PRINTS High mobility group protein (HMGY) signature 117 136 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Pral3044g00005 169 PRINTS High mobility group protein (HMGY) signature 81 93 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Pral3044g00005 169 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677
Pral3044g00005 169 PRINTS AT-hook-like domain signature 126 136 IPR017956 GO:0003677
Pral3044g00005 169 PRINTS AT-hook-like domain signature 103 114 IPR017956 GO:0003677
Pral3044g00005 169 MobiDBLite consensus disorder prediction 68 169 - -
Pral3044g00005 169 SUPERFAMILY "Winged helix" DNA-binding domain 5 84 IPR036390 -
Pral3044g00005 169 SMART h15plus2 6 72 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral3044g00005 169 Pfam AT hook motif 83 94 IPR017956 GO:0003677
Pral3044g00005 169 Pfam AT hook motif 128 138 IPR017956 GO:0003677
Pral3044g00005 169 Pfam AT hook motif 150 159 IPR017956 GO:0003677
Pral3044g00005 169 Pfam AT hook motif 105 116 IPR017956 GO:0003677
Pral3044g00005 169 Gene3D - 4 92 IPR036388 -
Pral3044g00005 169 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 8 77 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral3044g00005 169 MobiDBLite consensus disorder prediction 152 169 - -
Pral3044g00005 169 MobiDBLite consensus disorder prediction 91 114 - -
Pral3044g00005 169 FunFam HMG-Y-related protein A 5 87 - -
Pral3044g00005 169 SMART AT_hook_2 149 161 IPR017956 GO:0003677
Pral3044g00005 169 SMART AT_hook_2 105 117 IPR017956 GO:0003677
Pral3044g00005 169 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Pral3044g00005 169 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Pral3044g00005 169 PANTHER HISTONE H1 8 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3044g00005 Pral-Chr3044 27864 28964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3044g00005 15 77 Single Myb Histone (SMH) Gene Family AT1G49950 38.095 1.00e-05 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3044g00005 - - gmx:100793697 224.942