Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3044g00003 ATGGATCCTCTTTCTAAGTTGGTTCTACGGTGCAAGATTTCAGTTAACTTCTCTAGTTCACCGTATTTTGCAAAGGAGCTTCCTTCACGAAACATCAGAACTGGCGCTCTCACTTGTAGCATAGCACCCGTTTATGTGCAGTGGTCTTTTCGCAGAACCAGGCGTTTTCCATGGCAGCACGATTTATTTGAAGATAGCTTAAAAGCTGCAGGTATACACGGAATAGAAGTGGGCACAAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAACGAAGATATAAGGGAACTTTTTGCGGAGATTGGAGACTTGAAGCGCTATGCAGTTCACTATGACAGAAATGGTCGTCCTAGTGGTTCAGCTGAAGTTGTCTATACAAGAAGGAGCGATGCATTTGCAGCTCTTAAACGGTACAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAAGTTGTTGGTGCCAATGCAGAATTGCCTGTATCAGCTCGTGTGAATGTTTCTGGGATAAATGGGCAGAGGAAGAGGACAGTTGTCATGACGCCTGGAGGTCGACCTGGAGGTAGAGCTGGAGGTCCTGCTATGTTTAATCGTGGTGCAGGCTGGGGACGTCGTGGTGGTGGAAGGAGCGGTGGTGGGAGTATGCGTGGTCGAGGCGGTGGACGGGGTCGCGGTCGTGGTCGTGGTCGAGGGCGTGGTAAGAAGGATGGGGTTGAGAAGTCTGCTGAGGAACTTGACAAGGAACTGGAGACTTATCATGCGGATGCCATGCACATCTCATGA 786 0.4847 MDPLSKLVLRCKISVNFSSSPYFAKELPSRNIRTGALTCSIAPVYVQWSFRRTRRFPWQHDLFEDSLKAAGIHGIEVGTKLYVSNLDHGVTNEDIRELFAEIGDLKRYAVHYDRNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEVVGANAELPVSARVNVSGINGQRKRTVVMTPGGRPGGRAGGPAMFNRGAGWGRRGGGRSGGGSMRGRGGGRGRGRGRGRGRGKKDGVEKSAEELDKELETYHADAMHIS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3044g00003 261 Gene3D - 75 155 IPR012677 -
Pral3044g00003 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 149 IPR000504 GO:0003723
Pral3044g00003 261 SUPERFAMILY RNA-binding domain, RBD 73 153 IPR035979 GO:0003676
Pral3044g00003 261 MobiDBLite consensus disorder prediction 233 261 - -
Pral3044g00003 261 Coils Coil 236 256 - -
Pral3044g00003 261 MobiDBLite consensus disorder prediction 182 261 - -
Pral3044g00003 261 CDD RRM_THOC4 79 152 - -
Pral3044g00003 261 SMART rrm1_1 80 152 IPR000504 GO:0003723
Pral3044g00003 261 SMART FoP_duplication_2 187 261 IPR025715 -
Pral3044g00003 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Pral3044g00003 261 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 38 259 - -
Pral3044g00003 261 Pfam C-terminal duplication domain of Friend of PRMT1 202 255 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3044g00003 Pral-Chr3044 11936 15052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3044g00003 63 216 Eukaryotic Initiation Factors Gene Family AT1G49760 30.588 3.82e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3044g00003 K12881 - gmx:100801491 293.123